Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M6 Luminal_UniqueNum	BreastC_M6 Luminal_pVal	BreastC_M6 Luminal_Unique	ColonC_M3 Enterocyte_UniqueNum	ColonC_M3 Enterocyte_pVal	ColonC_M3 Enterocyte_Unique
BASAKI_YBX1_TARGETS_DN	16	CAMK2N1|CERS6|COBLL1|CRYZL2P|FAM110C|GPD1L|MGAT4A|NEBL|PIK3R1|PRKAB1|SLC30A1|SLC40A1|SSBP4|STMN3|STOX1|VAV3	1.61174913056e-06	57	5.99035160012e-08	AMN1|ANKRD50|ARRB1|ARSD|ASMTL|ASPH|ATP7A|BDH2|BHLHE40|CA12|CGNL1|CUEDC1|DCAF16|DEPTOR|DNAH12|DUSP5|DYNC2H1|EEF1A1|ESR1|FAM214A|FLRT3|GDF15|GLCCI1|GOLGA2P5|HES1|HGD|IL6ST|KCTD6|KDM4B|LOC93622|MAST4|MEGF9|MUC1|MZF1|NFKBIZ|P4HTM|PCSK6|PGPEP1|PSD3|RAB3IP|RAP1GAP|RBM47|SEMA4B|SERPINA1|SLC1A1|SLC2A10|SLC22A18|STC1|SYTL2|TMC5|TNFSF10|TP53INP1|TSC22D3|TSPAN1|UCP2|VPS13B|WDR1	30	3.16359474512e-06	AK4|ARL14|CDH1|CDK12|CHGA|CKB|CXADR|FAM13A|FAM189A1|GALNT3|GRB7|KRCC1|MPZL2|MSI2|MYEF2|PAPD5|PDE9A|PRUNE2|PTP4A1|RBM39|SGK2|SLC3A1|SLC25A27|SLC44A1|SMOC2|SNTB1|TFDP2|TM9SF3|TSPAN6|ZBTB18
BILD_E2F3_ONCOGENIC_SIGNATURE	9	ARFGEF3|C5ORF30|CAMK2N1|CXXC5|FAM222A|FGFR3|REEP1|RETREG1|ZNF703	0.000338400858203	33	0.000564717799846	ADGRB2|AKT1|ATRNL1|BCOR|CCNO|CDC20B|DGKQ|DIS3L|EEF1A2|ENO2|EPB41L4A|FRAT1|GLRB|KCTD6|KDM4B|KISS1R|LRIG1|LYPD6|MANEAL|MBOAT1|MYB|RAB15|RASEF|SCNN1A|SLC9A3R1|SLC16A6|SLC25A12|SREBF1|TBC1D9|TPPP|TRIM3|TSHZ1|ZBTB42	21	0.000112083916559	ADCY3|AK4|CEBPA|DDAH1|EPB41L4B|FAM171A1|FOXQ1|GNAS|IL17RB|KHDRBS3|LOC646762|LRP4|NOL4L|RIPPLY3|SBK1|SMAD6|SRSF6|TAF4|TMEM106C|TSPAN5|ZDHHC23
CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_UP	6	DUSP16|FXYD3|MPP7|OVOL1|PROM2|RNF43	0.000337136835224	20	0.000304200866289	CDS1|EHF|EPB41L4A|EPN3|KIAA0040|LOC93622|MARVELD2|MUC1|PRR15L|RHOD|S100A14|S100P|SCNN1A|SERPINA3|SPINT1|SSH3|SYTL1|TC2N|TSC22D3|TSTD1	12	0.000370072804159	ATP1A1|CD24|CDH1|DMAC1|KRT15|MPZL3|OSER1|PPP1R14C|RBL2|RTKN|SH3YL1|ST14
CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP	44	ABAT|ACVR1B|ANXA9|ARFGEF3|AZGP1|C11ORF52|CACNA1D|CAMK2N1|CEACAM6|CERS6|DUSP16|ENPP5|EPB41L5|ERBB3|FXYD3|GALNT6|GOLT1A|GPD1L|GPR160|H2AFJ|INPP5J|LNX1|MGAT4A|MPP7|MSX2|NEBL|OVOL1|PER2|PPM1H|PRLR|PROM2|PRR15|RNF103|SELENBP1|SORL1|SPOPL|SULT2B1|SUOX|SYNE4|TP53TG1|TTC39A|TUFT1|VAV3|WFS1	3.4335225093e-15	155	1.08119533676e-79	ABCA12|ABCC11|ABCG1|ADCY6|ADIRF|AGR2|ALDH3B2|ALDH4A1|ANKRD30A|AP1M2|ARFIP2|ARRDC1|ASB8|BCAS1|BICDL1|C9ORF152|CA12|CACFD1|CACNB3|CACNG4|CADPS2|CAMSAP3|CAPN8|CDS1|CGN|CNNM4|COMMD3|CRABP2|CREB3L4|CRIP1|CRIP2|CRNDE|CSAD|CTNND2|CXORF40A|CXORF40B|CYB5A|CYB561|CYP4B1|DCAF11|DEGS2|DHRS4-AS1|DLG3|DNAJC1|DOK7|EFHD1|EHF|EPB41L4A|EPN3|EPS8L1|ESR1|FAAH|FAM102A|FAM174B|FAM214A|FBP1|FGD3|FOXA1|GATA3|GGT6|HID1|IGFBP2|IRX5|ITPK1|JUP|KIAA0040|KIAA1211L|KIAA1324|KRT19|LMTK3|LOC93622|LYPD3|MARVELD2|MCCC2|MEGF9|MGMT|MKNK2|MLPH|MMEL1|MREG|MRFAP1L1|MUC1|MYB|MYO6|NPDC1|P4HTM|PATJ|PATZ1|PGAP2|PIP4K2C|PLEKHA6|PPDPF|PREX1|PRODH|PRR15L|RAB3D|RAB5B|RAB17|RAB27B|RALGPS1|RASEF|RBM47|RERG|RGL2|RHOB|RMND5B|RSPH1|S100A14|S100P|SEMA3F|SIDT1|SLC7A8|SLC9A3R1|SLC16A14|SLC25A29|SPDEF|SPINT1|SSH3|ST6GALNAC2|STARD10|SYNGR2|SYTL1|TADA2B|TBC1D30|TC2N|TFF1|TFF3|TJP3|TLE3|TMBIM4|TMBIM6|TMC4|TMED3|TMEM45B|TMEM125|TMEM184A|TMEM229B|TMEM268|TOX3|TRIL|TRIM3|TRPM4|TRPS1|TSC22D3|TSPAN1|TSPAN13|TSTD1|TTC9|VIPR1|XBP1|ZBTB7B|ZBTB42|ZG16B|ZNF385A|ZNF467	29	6.8670450186e-15	ANK3|BEX5|CD24|CDH1|CEBPA|CHN2|EFNA4|EPCAM|EPHB3|EXPH5|FREM2|GET4|GPR157|GRB7|HILPDA|KRT23|LLGL2|MARVELD3|MPZL3|MYLIP|PADI2|PPFIBP2|PPP1R3D|SEPHS2|SH3YL1|SHANK2|ST14|TOB1|ZNF74
CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_DN	8	C11ORF52|EFCAB6|EPB41L5|FHDC1|FMO5|RETREG1|SYNE4|VWA5A	3.32640433888e-07	75	1.15198927142e-11	ADCY9|AKAP5|ALDH3A2|ANXA11|AR|ASTN2|BBS4|C1ORF210|C15ORF59|CAMTA1|CASP9|CCDC30|CCDC57|CCDC148|CDS1|CFAP69|CLDN12|CLIC6|COBL|CST6|CYB5D2|DEGS2|DNAJC1|DNAJC16|EPS8L1|FAAH|FAM81B|FAM110B|GATAD1|GATM|GLB1L|GPRC5C|IP6K2|IQCH|IRX3|KIAA1211L|KIF9|LMTK3|LRPAP1|LYG1|NFIA|NRXN3|OSBPL10|OSCP1|P4HTM|PAX2|PHYHD1|PIGV|PKHD1|PRKAA2|PRR15L|RAB3IP|RBM47|RGS12|SCNN1A|SLC44A4|SPRYD3|SPTLC3|SUMF2|SYTL2|TJP3|TM7SF3|TMC4|TMEM125|TNFSF10|TRIL|TSPAN1|UBXN10|VPS37D|WDFY3|WDR48|WDR78|WFDC2|ZBED5-AS1|ZMYND12	40	6.65269347884e-07	AXIN2|BCL11A|BEND7|CCL28|CHDH|CXADR|CYB5B|FAT1|FLJ37453|FREM2|GALNT3|ID4|IL17RB|ILDR1|KCNK5|LIME1|LRRC19|LRRFIP2|MARVELD3|MSI2|NRF1|NSUN7|OCLN|OR7E14P|PDCD6IP|PLEKHA7|PLS1|PTPRD|PTPRK|RBL2|RUNDC3B|SAMD13|SATB2|SEL1L3|SEMA5A|SIK2|SOSTDC1|ST14|VAPB|ZBTB18
CHIANG_LIVER_CANCER_SUBCLASS_CTNNB1_UP	8	BMP4|CCDC170|ESRRG|FAM3B|MYRIP|NKD1|SELENBP1|TBX3	1.73150669578e-05	28	3.46140665598e-05	ACSS3|ALDH3A2|ANKFN1|AQP11|AR|C20ORF204|CAP2|CYP2E1|DCXR|DNAJC12|FGF13|GFRA1|GLUL|GPHN|HHAT|HOGA1|IRS1|IRX3|ITPR2|SEC14L2|SLC1A2|SLC16A4|SLC22A4|TBCK|TPRG1|TTC9|UBXN10|ZNF385B	24	1.60673558105e-08	ABHD6|ACE2|ACSL5|ACSL6|ADH6|AMACR|AXIN2|BAMBI|CTNNBL1|EPHB2|EXPH5|FITM2|LGR5|MME|RAB11FIP2|RBP1|RUNDC3B|SLC5A6|SLC13A3|SULT1B1|TSPAN5|TTPA|WASHC3|ZNRF3
COLDREN_GEFITINIB_RESISTANCE_DN	16	ANXA9|ARFGEF3|COBLL1|ENPP5|ERBB3|FXYD3|GPR160|LNX1|MPP7|NPNT|OVOL1|REPS2|SLC35A3|SPOPL|SYNE4|VAV3	1.46862197975e-09	51	7.83323338385e-16	AGR2|AIG1|AP1M2|C1ORF21|CAPN8|CCDC57|CCDC115|CCDC149|CDS1|CGN|CST6|DOK7|EHF|ENPP4|EPN3|EPS8L1|FOXA1|HMGCL|KIAA0040|KIAA1211L|KRT19|LIPH|LRG1|MBOAT1|MYO6|PRR15L|PRRG2|PSD4|PTK6|RAB38|RASEF|RBM47|RHOD|S100A14|S100A16|SLC1A1|SMIM22|SPINT1|SPTLC3|STARD10|STK39|SYTL1|SYTL5|TC2N|TJP3|TMC4|TMC5|TMEM45B|TMEM125|TSPAN1|ZNF91	23	2.93724317618e-09	CDH1|ERP27|EXPH5|FGD4|GALNT3|GNAS|KCNMB4|KRT15|MAPK13|MARVELD3|MFSD6|MPZL2|MPZL3|OCLN|PLEKHA7|RNF114|SH3BGRL2|SH3YL1|SLC44A3|SRPX2|ST14|WFDC3|ZDHHC21
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3	15	ARFGEF3|ARHGAP44|CEACAM5|CEACAM6|FAM110C|GALNT6|GPR143|HMGCS2|LRRC31|PRKAB1|PRR15|SELENBP1|SH2D4A|SLC12A2|TAF1A-AS1	7.44521716609e-08	104	1.4890418486e-07	ADRB1|AGAP1|AMIGO1|ASAH1|ASPH|ATG16L1|ATP1B1|ATP7B|BBS4|BCAS1|BPIFB1|C2ORF72|CCDC30|CCDC160|CDRT4|CDS1|CFAP44|CFB|CGN|CIB1|CLDN12|CLGN|CNDP2|CORO2A|CRIP1|CRISP2|CRISP3|CYB5A|DHCR24|DUSP4|EHF|ENTPD3|EPN3|ETFDH|FAM129A|FCGBP|FRY|GALNT7|GDF15|GLT8D1|GNA14|GOLGB1|GOLM1|GPC4|GPCPD1|KCNE4|KCNS3|KIAA0232|KLHDC7A|LIMCH1|LRPAP1|LRRC6|MEAF6|MISP|MTHFR|MUC1|NANS|NCEH1|NKX3-1|NTN4|OSBPL10|PAK6|PAX9|PCSK6|PDLIM5|PGPEP1|PLEKHS1|PLIN5|PRRT3|PTK6|PTPN13|PTPRN2|QSOX1|RBKS|S100P|SASH1|SCGB2A1|SCNN1A|SH3RF1|SLC16A14|SLC27A2|SLC35D2|SLC44A5|STEAP1|STEAP2|STK39|STS|SYT17|TACC2|TBC1D9B|TC2N|TCEA3|TMBIM6|TMC5|TMEM45B|TMTC2|TOX3|TRAK1|TSHZ1|TSPAN1|VIPR1|WDR72|WFDC2|YIPF1	81	1.58461849758e-13	ACOX1|ACVR1C|ADD3|AK3|ARFGEF2|ATP10B|BEND7|BIN1|CCDC186|CD46|CD164|CEACAM1|CEBPB|CHN2|CLDN23|CTSV|CTTNBP2|CXADR|DBI|DYRK2|EEPD1|EIF2AK3|EPB41L4B|ETNK1|FAM13A|FAM13A-AS1|FAM84A|FAM171A1|FAM217B|FER1L4|FZD5|GALNT3|GFPT1|GNAS|IFNLR1|ILDR1|ITM2C|KRT20|KRT23|LCOR|LRP11|LY75|MANSC1|MFSD6|MUC20|NOL4L|NSUN7|OCIAD2|OR7E14P|OSBPL2|PCDH8|PCTP|PDE9A|PLEKHA7|PPARG|PPFIBP2|PPP1R3D|PRKACB|RAB22A|SEC63|SH3BGRL2|SLC16A9|SLC25A27|SLC44A1|SLC44A3|SLCO4A1|SNCAIP|SNTB1|SPAG1|SPAG4|ST14|STT3B|SUSD1|TGOLN2|TLCD2|TM9SF3|TRIM31|TSPAN5|WIPI1|ZMYND8|ZNF503
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5	18	ARFGEF3|CEACAM5|CEACAM6|COBLL1|DRAIC|FAM110C|GPR160|LNX1|NEBL|NOSTRIN|PROM2|REEP1|RNF103|SH3BP4|SLC12A2|SPRED2|TMEM87B|ZNF827	6.16467273706e-08	85	1.59202237765e-13	AACS|ABCC5|ACADSB|AGR2|ALCAM|ALDH3B2|ARHGEF37|ARRB1|ASAH1|ATP6V1G1|BCAM|BCAS1|C1ORF115|CAPN9|CCDC160|CDS1|COL28A1|CORO2A|CPEB2|CRISP3|CTNND2|CXORF40A|DHCR24|DOPEY2|ENPP1|EPB41L4A|EPN3|ERBB4|FAM129A|FAM198B|FAM234B|FAM241A|FBP1|FGF12|FGF13|GALNT7|GATA2|GDF15|GLCCI1|HSPA2|HTR7P1|KCNMA1|LFNG|LIMCH1|LRPAP1|MARC2|MTA3|MUC1|NCEH1|NXPH1|PALM3|PBX1|PBX3|PGPEP1|PIP4K2C|PLEKHS1|PLK2|PLLP|PP14571|PRR15L|PRRT3|PSD3|PTK6|PTPN13|RAB27B|RAI2|SASH1|SC5D|SCCPDH|SERHL2|SGSM1|SH3BGRL|SMIM14|TBC1D30|TC2N|TMEM45B|TMEM135|TRAK1|TRIM62|TSPAN1|TSPAN13|TTC9|UGDH|VPS13B|YIPF1	41	1.23293295539e-07	ANK3|APLP2|APOLD1|BAMBI|BMP7|CAB39L|CEACAM7|CERK|DBI|DIDO1|DYRK2|EEA1|EPB41L2|EPB41L4B|FAM210B|FZD5|GALNT3|GPR157|KLF7|LGALSL|LRP11|MFAP3L|MFSD6|MPZL2|MYCL|OR7E14P|OSBPL2|PARM1|PLEKHA7|PPFIBP2|RAB22A|RHOU|SHANK2|SOWAHC|SPAG1|STK38L|TMEM41B|TRAF5|TTC39B|WIPI1|ZDHHC23
EGFR_UP.V1_DN	5	ANXA9|PDZK1|PHF20|RNF43|TTC39A	0.000162486058167	34	3.55984366896e-05	ABLIM1|AGL|APBB2|ARL3|ASCL1|BCL2|C16ORF45|CBR4|CELSR2|DNAJC12|EFHD1|ELOVL2|ELOVL5|ENPP4|FAM234B|FTO|GFRA1|GREB1|HEBP1|IGF1R|IRS1|KIAA1324|KIF5C|MSMB|MYB|NPY1R|NRIP1|PGR|PRR15L|RUFY1|SH3GLB2|SLC1A1|SLC27A2|TSC22D3	20	0.000289373679645	ADD3|ANK3|COL9A3|CTSH|DERA|EPB41L2|EPS8|GPATCH1|ID1|ID2|LLGL2|PCMTD2|PRKACB|PRKD3|PRPF6|RCN1|RHOBTB3|SATB2|SMAD7|TSPAN5
ESC_V6.5_UP_EARLY.V1_UP	5	ABCC6|DACH1|HDAC11|MAGI3|PDZK1	0.000216891180891	28	0.000138656158556	ACSS1|CBWD1|CCDC114|CELSR3|CGNL1|CRAT|DEPTOR|DOC2A|FBP1|GADD45G|HIVEP3|IRX2|KCNC1|LEF1|LRIG1|MBOAT1|MYB|RAI1|SASH1|SH3RF1|SLC23A1|SPEF1|SYTL2|TCEAL1|TEX9|TMEM121|VPS39|WDFY3	17	0.000295126203226	C9|CA4|CYP27A1|DRC1|FGF19|FOXQ1|GRM8|HES6|OCLN|PKDREJ|PRKACB|PTK7|RASAL2|SATB1|TTPA|ZG16|ZNF322
FARMER_BREAST_CANCER_APOCRINE_VS_BASAL	20	ABCC6|ACOX2|AZGP1|CERS6|CNTNAP2|CROT|ESRRG|FMO5|GGTLC1|GPD1L|HMGCS2|MSX2|PIK3R1|PRLR|SH3BP4|SLC26A3|SLC35A3|SPRED2|TP53TG1|VWA5A	1.27124191047e-06	89	6.2078234785e-29	ABCA12|ABCC5|ACSS3|AKAP9|AKR1A1|ALCAM|ALDH3B2|AR|ARFIP2|ATP6V1G1|ATP7A|BBS1|C16ORF45|CADPS2|CASD1|CERS4|CLGN|CRAT|CRISP3|CYB5A|CYB561|CYP4F8|DALRD3|DCXR|DHCR24|DHRS2|DUSP4|DUSP10|EFHD1|EGF|ELOVL5|ERBB4|FAH|FAM174B|FAM234B|FASN|FOXA1|GALNT7|GNMT|HGD|INPP4B|KCNMA1|KDM4B|KIAA1324|KRT18|LIMCH1|LONP2|LRBA|MAGED2|MAPT|MKNK2|MLPH|NANS|P2RY2|PDLIM1|PEX11A|PIP|PON2|PRKAR2B|PRR15L|PTK6|QSOX1|RBM47|RETSAT|RHOB|RND1|SC5D|SCNN1A|SERHL2|SIDT1|SIGLEC15|SLC2A10|SLC9A3R1|SLC19A2|SLC22A18|SLC38A1|SPDEF|SREBF1|TFAP2B|TMEM135|TRAK2|TRIL|TRIM36|TSC22D3|TSPAN13|UCP2|UGDH|UGT2B28|XBP1	23	2.54248382094e-06	ACE2|AK4|AMACR|ANKRD27|APLP2|BCL11A|CDH1|CLDN8|DBI|DMD|GLS|GSPT2|KANK1|MYC|NEDD4|PFDN4|PLAGL1|PRKACB|SEL1L3|SEPHS2|TMEM41B|UBE2C|ZMYND8
GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_UP	5	ARFGEF3|BCAS4|DUSP16|PARD6B|SERINC3	2.02127395795e-05	22	4.03073423064e-05	ADCY1|ADD1|BAIAP3|CACNG4|CDS1|DIXDC1|DLG5|ELP2|ENPP1|ESR1|HSPB1|IFT22|ITPRIPL2|MAPT|MORF4L2|PTPN13|RNASE4|SLC4A7|SLC39A6|SMIM14|TMBIM4|ZNF91	19	1.18136852576e-07	ADNP|ARFGEF2|CTNNBL1|DPM1|EMILIN3|ERGIC3|FITM2|MTG2|NCOA3|PPP1R3D|PSMA7|RBM39|RHOBTB3|ROMO1|STAU1|STX16|UQCC1|YWHAB|ZNF217
GOZGIT_ESR1_TARGETS_DN	30	ABAT|AREG|ARFGEF3|C11ORF52|CCDC170|CEACAM5|CEACAM6|CERS6|COBLL1|DACH1|EPB41L1|EPB41L5|GAD1|LIN7A|NAT1|NEBL|NPNT|PDZK1|PRLR|RNF43|SELENBP1|SEMA3C|SHROOM2|SLC12A2|SPRED2|STMN3|TMEM150C|TP53TG1|TTC39A|VAV3	4.68370202028e-08	185	3.70793330276e-47	ABCA12|ABHD2|ABLIM1|ADAMTS19|ADCY1|ADCY9|AFF3|AGR2|AGR3|AKAP5|ALCAM|ANKRD50|APBB2|AR|ARMT1|ATP1B1|ATRNL1|BCAS1|BCL6|BLVRA|BMPR1B|C6ORF141|C9ORF152|CA12|CACNG4|CAP2|CAPN9|CCDC83|CELSR2|CFB|COL4A5|CPEB2|CRABP2|CRACR2A|CRISP3|CTNND2|CTSF|CUEDC1|DCDC2|DEGS2|DEPTOR|DGKD|DNAJC12|DUSP10|EEF1A2|ELP2|ENPP1|ERBB4|ESR1|EVL|FAM102A|FAM198B|FAM241A|FBP1|FGF13|FGFR2|FLRT3|FOXA1|FUT8|FUT8-AS1|GATA3|GDF15|GFRA1|GNA14|GPATCH2|GPC4|GREB1|GRIK3|GSTT1|HAGLR|HDGFL3|HID1|ICA1L|IFITM10|IFT122|IGF1R|INPP4B|IRS1|IRX5|KCNJ3|KCNK6|KIAA1324|LARGE1|LINC00052|LOC100147773|LOXL1-AS1|LURAP1L|MACROD2|MAST4|MBOAT1|MCOLN3|MLPH|MS4A15|MSMB|MYO6|NECTIN2|NFKBIZ|NINJ1|NUDT16|OLFM1|PATJ|PCDH10|PCSK6|PDLIM5|PGPEP1|PGR|PKIB|PLEKHS1|PLK2|PLLP|POF1B|PP14571|PPP1R3C|PRR15L|PRRT3|PSD3|PTPN13|PYCARD|RAB27B|RABEP1|RAI1|RARA|RERG|RET|RGS22|SCCPDH|SCNN1A|SCUBE2|SDR16C5|SERPINA1|SERPINA3|SERPINA5|SFXN2|SH3BGRL|SHROOM3|SIDT1|SIGLEC15|SLC1A1|SLC1A2|SLC2A10|SLC7A2|SLC16A6|SLC16A14|SLC19A2|SLC25A29|SLC27A2|SLC39A6|SLITRK6|SMIM14|SMIM22|SPTSSB|STC1|STC2|STON2|SYT1|SYTL1|SYTL2|SYTL5|TANC2|TBC1D9|TC2N|TCEAL1|TCEAL3|TFF1|TFF3|THSD4|TIGD6|TMEM45B|TMTC2|TNFSF10|TOM1L2|TRPS1|TSC22D3|TSPAN1|TSPAN13|TSPAN15|TTC9|UCP2|UGCG|UGDH|UGT2B15|XBP1|YPEL2|ZG16B|ZPLD1	52	9.36740404056e-08	ADGRF4|AK4|ANK3|ASAP1|ATP9A|BAMBI|CAB39L|CCL28|CEACAM1|CEMIP|DNM3|EDN1|FAM84A|FAM105A|FAT1|GALNT4|GPX2|HOXB3|KANK1|KLF7|LGALSL|LSM14B|MARVELD3|MLLT3|MUC20|NCKAP5|NR5A2|OR7E14P|PLEKHA7|PMEPA1|PROCR|PRSS23|PSTPIP2|PTGR1|PTPRK|RAB29|RHOBTB3|RIPPLY3|RUBCNL|RUNDC3B|SESN3|SH3BGRL2|SHANK2|SNAPC3|SPAG4|TEAD2|TGFBI|TGIF2|TGM2|TMEM106C|VIL1|WIPI1
HALLMARK_BILE_ACID_METABOLISM	3	CROT|SERPINA6|SULT2B1	0.000654567545947	20	0.000849564447948	ABCA2|ABCD3|ALDH8A1|AR|BCAR3|DHCR24|DIO1|EFHC1|GNMT|ISOC1|LONP2|NUDT12|PEX11A|PEX11G|PFKM|RETSAT|RXRA|SLC22A18|SLC23A1|SLC27A2	14	0.000459570643945	ACSL5|AMACR|CYP27A1|CYP39A1|EPHX2|NEDD4|NR0B2|NR1I2|PHYH|PIPOX|PRDX5|RBP1|SULT1B1|TFCP2L1
HALLMARK_ESTROGEN_RESPONSE_LATE	12	ACOX2|ANXA9|AREG|CHPT1|CYP4F11|FGFR3|HMGCS2|PDZK1|PRLR|SLC22A5|SULT2B1|WFS1	0.000114115178034	59	2.13799889333e-21	ABHD2|AFF1|AGR2|ALDH3A2|ARL3|ASCL1|BAG1|BCL2|CA12|CACNA2D2|CCND1|CELSR2|CHST8|CISH|COX6C|DCXR|DHRS2|DLG5|DNAJC1|DNAJC12|ELOVL5|FAM102A|FLNB|HSPB8|IGSF1|IL6ST|ITPK1|KRT19|LARGE1|MAPT|MYB|NAB2|NPY1R|NRIP1|OLFM1|PGR|PRKAR2B|PTGER3|RABEP1|RET|SCNN1A|SCUBE2|SERPINA1|SERPINA3|SERPINA5|SIAH2|SLC1A4|SLC9A3R1|SLC27A2|SORD|ST6GALNAC2|TFF1|TFF3|TJP3|TPBG|TSPAN13|UGDH|UNC13B|XBP1	14	0.000228230356068	ADD3|CDH1|CKB|ID2|IL17RB|KCNK5|LLGL2|MAPK13|MEST|PRSS23|SLC2A8|SLC26A2|ST14|TOB1
HALLMARK_PEROXISOME	3	SEMA3C|SERPINA6|SULT2B1	0.000599725411342	19	0.000793603488582	ABCC5|ABCC8|ABCD3|CRABP2|CRAT|CTBP1|DHCR24|DIO1|ECI2|ELOVL5|HMGCL|ISOC1|LONP2|PEX11A|RETSAT|SLC25A4|SLC27A2|STS|UGT2B17	13	0.000405847334103	ABCB1|ABCB4|ACOT8|ACOX1|ACSL5|CEL|EPHX2|FABP6|HSD11B2|NR1I2|NUDT19|PRDX5|SIAH1
Human Breast_Charafe-Jauffret06_1309genes (16288205-GeneTable3)	45	ABAT|ACVR1B|ANXA9|ARFGEF3|AZGP1|C11ORF52|CACNA1D|CAMK2N1|CEACAM6|CERS6|DUSP16|ENPP5|EPB41L5|ERBB3|FXYD3|GALNT6|GOLT1A|GPD1L|GPR160|H2AFJ|INPP5J|LNX1|MGAT4A|MPP7|MSX2|NEBL|OVOL1|PER2|PPM1H|PRLR|PROM2|PRR15|RNF103|SELENBP1|SORL1|SPOPL|STRADB|SULT2B1|SUOX|SYNE4|TP53TG1|TTC39A|TUFT1|VAV3|WFS1	3.0369383177e-09	154	6.12826257016e-26	ABCA12|ABCC11|ABCG1|ADCY6|ADIRF|AGR2|AK5|ALDH3B2|ALDH4A1|ANKRD30A|AP1M2|ARFIP2|ARRDC1|ASB8|BCAS1|BICDL1|C9ORF152|CA12|CACFD1|CACNB3|CADPS2|CAMSAP3|CAPN8|CDS1|CGN|CNNM4|COMMD3|CRABP2|CREB3L4|CRIP2|CRNDE|CSAD|CTNND2|CXORF40B|CYB5A|CYB561|CYP4B1|DCAF11|DEGS2|DHRS4-AS1|DLG3|DNAJC1|DOK7|EFHD1|EHF|EPB41L4A|EPS8L1|ESR1|FAAH|FAM102A|FAM174B|FAM214A|FBP1|FGD3|FOXA1|GATA3|GGT6|HID1|IGFBP2|IRX5|ITPK1|JUP|KIAA0040|KIAA1211L|KIAA1324|KRT19|LMTK3|LYPD3|MARVELD2|MCCC2|MEGF9|MGMT|MIR29B2|MKNK2|MLPH|MMEL1|MREG|MRFAP1L1|MTCL1|MUC1|MYB|MYO6|NPDC1|P4HTM|PATJ|PATZ1|PDE4A|PGAP2|PIP4K2C|PLAT|PLEKHA6|PPDPF|PREX1|PRODH|PRR15L|RAB3D|RAB5B|RAB17|RAB27B|RALGPS1|RASEF|RBM47|RERG|RGL2|RHOB|RMND5B|RSPH1|S100A14|S100P|SEMA3F|SIDT1|SLC7A8|SLC9A3R1|SLC16A14|SLC25A29|SPDEF|SPINT1|SSH3|ST6GALNAC2|STARD10|SYNGR2|SYTL1|TADA2B|TBC1D30|TC2N|TFF1|TFF3|TJP3|TLE3|TMBIM4|TMBIM6|TMC4|TMED3|TMEM45B|TMEM125|TMEM229B|TMEM268|TOX3|TRIL|TRIM3|TRPM4|TRPS1|TSC22D3|TSPAN1|TSPAN13|TSTD1|TTC9|VIPR1|XBP1|ZBTB7B|ZBTB42|ZG16B|ZNF385A|ZNF467	54	6.0738766354e-09	ABCC4|ADD3|ANK3|ASAP1|ASXL1|BEX5|BIN1|CDH1|CEBPA|CHN2|CPNE2|DMD|EFNA4|EPB41L2|EPCAM|EPHB3|EVA1A|EXPH5|FAM171A1|FHOD3|FOXQ1|FREM2|GET4|GLS|GPR157|GRB7|HILPDA|IRAK2|ITM2C|KLHL29|KRT23|LLGL2|MAPRE1|MARVELD3|MPP1|MPZL3|MYLIP|NMT2|OCLN|PADI2|PDE3A|PPFIBP2|PPP1R3D|PRKD3|RNF182|SEMA3A|SEPHS2|SERPINE2|SH3YL1|SHANK2|ST14|TGFBI|TOB1|ZNF74
Human Breast_Creighton08_453genes (18794137-SuppTable1d)	9	ABAT|FYB2|PARD6B|PDZK1|PIK3R1|SLC22A5|STMN3|TTC39A|ZNF703	7.23679690225e-05	76	1.95597448248e-18	ADAMTS15|ADAMTS19|ADCY9|AFF1|APH1B|ARHGAP36|ATRNL1|BCL2|BHLHE40|BOD1|C1ORF226|C16ORF74|CA12|CELSR2|COL4A5|COPS9|COX6C|COX15|CYB5A|DLG5|DOK7|ELOVL2|ELOVL5|ELP2|FGD3|FLNB|FTO|GREB1|GRIK3|HSPB8|IGF1R|IGSF1|IL20|IL24|IRS1|IRX3|KCNJ3|KCTD6|LARGE1|LRIG1|MAPT|MED13L|MYB|NOP14|NOS1AP|NPY1R|NRIP1|NRXN3|OLFM1|PCBD2|PDLIM1|PGR|PKIB|PLIN5|RBM24|RERG|RGS22|RMST|RPH3AL|SCUBE2|SEMA3F|SERPINA3|SERPINA5|SIAH2|SLC1A4|SLC19A2|SLC27A2|STC1|SUSD3|SYBU|SYTL4|SYTL5|TIPARP|TMEM164|TPBG|ZNF385B	26	0.000144735938045	ADD3|AK4|APLP2|BCL11B|CEP68|DHTKD1|FOXO3|FREM2|GLS|HNMT|IL17RB|ITGA2|JARID2|KCNMB4|MEX3A|MSI2|MYC|PRKD3|PRSS23|PSMG1|RHOBTB3|SLC25A24|SLC26A2|SRI|SRPX2|TSPAN6
Human Breast_Creighton08_643genes (18794137-SuppTable1e)	17	ARFGEF3|CEACAM5|CEACAM6|COBLL1|FAM110C|GPR160|LNX1|NEBL|NOSTRIN|PROM2|REEP1|RNF103|SH3BP4|SLC12A2|SPRED2|TMEM87B|ZNF827	1.13481805349e-07	87	6.27733951894e-14	AACS|ABCC5|ACADSB|AGR2|ALCAM|ALDH3B2|ARHGEF37|ASAH1|ATP6V1G1|BCAM|BCAS1|C1ORF115|CAPN9|CCDC160|CDS1|COL28A1|CORO2A|CPEB2|CRISP3|CTNND2|CXORF40B|DHCR24|DOPEY2|ENPP1|EPB41L4A|ERBB4|FAM129A|FAM198B|FAM234B|FAM241A|FBP1|FGF12|FGF13|GALNT7|GATA2|GDF15|GLCCI1|GREB1L|HSPA2|HTR7P1|KCNMA1|LFNG|LIMCH1|LRPAP1|LURAP1L|MARC2|MTA3|MUC1|NCEH1|NXPH1|PALM3|PAX9|PBX1|PBX3|PGPEP1|PIP4K2C|PLEKHS1|PLK2|PLLP|PRR15L|PRRT3|PSD3|PTK6|PTPN13|RAB27B|RAI2|SASH1|SC5D|SCCPDH|SERHL2|SGSM1|SH3BGRL|SMIM14|SPICE1|TBC1D30|TC2N|TMEM45B|TMEM135|TRAK1|TRIM62|TSPAN1|TSPAN13|TTC6|TTC9|UGDH|VPS13B|YIPF1	41	2.26963547924e-07	ANK3|APLP2|APOLD1|BAMBI|BMP7|CAB39L|CEACAM7|CERK|DBI|DIDO1|DYRK2|EEA1|EPB41L2|EPB41L4B|FAM210B|FZD5|GALNT3|GPR157|ID2|KLF7|LRP11|MFAP3L|MFSD6|MPZL2|MYCL|OCLN|OSBPL2|PARM1|PLEKHA7|PPFIBP2|RAB22A|RHOU|SHANK2|SOWAHC|SPAG1|STK38L|TMEM41B|TRAF5|TTC39B|WIPI1|ZDHHC23
Human Breast_Creighton08_1024genes (18794137-SuppTable1c)	14	ARFGEF3|ARHGAP44|CEACAM5|CEACAM6|FAM110C|GALNT6|GPR143|HMGCS2|LRRC31|PRKAB1|PRR15|SELENBP1|SH2D4A|SLC12A2	2.35057993822e-07	101	4.70115275156e-07	ADRB1|AGAP1|AMIGO1|ASAH1|ASPH|ATG16L1|ATP1B1|ATP7B|BBS4|BCAS1|BPIFB1|C2ORF72|CCDC160|CDS1|CFAP44|CFB|CGN|CIB1|CLDN12|CLGN|CNDP2|CORO2A|COX15|CRISP2|CRISP3|CYB5A|DHCR24|DUSP4|EHF|ENTPD3|ETFDH|FAM129A|FCGBP|FRY|GALNT7|GDF15|GLT8D1|GNA14|GOLGB1|GOLM1|GPC4|GPCPD1|KCNE4|KCNS3|KIAA0232|KLHDC7A|LIMCH1|LRPAP1|LRRC6|MEAF6|MISP|MTHFR|MUC1|NANS|NCEH1|NKX3-1|NTN4|OSBPL10|PAK6|PAX9|PCSK6|PDLIM5|PGPEP1|PLEKHS1|PLIN5|PRRT3|PTK6|PTPN13|PTPRN2|QSOX1|RBKS|S100P|SASH1|SCGB2A1|SCNN1A|SH3RF1|SLC16A14|SLC27A2|SLC35D2|SLC44A5|STEAP1|STEAP2|STK39|STS|SYT17|TACC2|TBC1D9B|TC2N|TCEA3|TMBIM6|TMC5|TMEM45B|TMTC2|TOX3|TRAK1|TSHZ1|TSPAN1|VIPR1|WDR72|WFDC2|YIPF1	79	7.12487527702e-13	ACOX1|ACVR1C|ADD3|AK3|ARFGEF2|ATP10B|BEND7|BIN1|CCDC186|CD46|CD164|CEACAM1|CEBPB|CHN2|CTSV|CTTNBP2|CXADR|DBI|DYRK2|EEPD1|EIF2AK3|EPB41L4B|ETNK1|FAM13A|FAM84A|FAM171A1|FAM217B|FER1L4|FZD5|GALNT3|GFPT1|GNAS|IFNLR1|ILDR1|ITM2C|KRT20|KRT23|LCOR|LRP11|LY75|MANSC1|MFSD6|MGAT5|MUC20|NOL4L|NSUN7|OCIAD2|OSBPL2|PCDH8|PCTP|PDE9A|PLEKHA7|PPARG|PPFIBP2|PPP1R3D|PRKACB|RAB22A|SEC63|SH3BGRL2|SIK2|SLC16A9|SLC25A27|SLC44A1|SLC44A3|SLCO4A1|SNCAIP|SNTB1|SPAG1|SPAG4|ST14|STT3B|SUSD1|TGOLN2|TM9SF3|TRIM31|TSPAN5|WIPI1|ZMYND8|ZNF503
Human Breast_Desmedt08_469genes_ESR1_Module (18698033-tableS1-ESR1)	19	ABAT|ACOX2|ANXA9|AREG|CAMK2N1|CYP2B6|GALNT6|GPD1L|HDAC11|INPP5J|MSX2|NAT1|PDZK1|PIGT|REPS2|RETREG1|RNF43|TBX3|TUFT1	5.5087471011e-05	152	3.66774307774e-54	ABCC8|ABCD3|ABLIM3|ACOX3|ADIPOR2|AGR2|AKR7A3|ALCAM|APBB2|APH1B|ASAH1|ASTN2|BBS1|BCAS1|BCOR|BEX1|C1ORF21|C3ORF18|C3ORF52|C16ORF45|CA12|CACFD1|CACNG1|CCNO|CDK20|CERS4|CFAP45|CFB|CHAD|CIB1|CITED1|CLBA1|CLGN|CLUAP1|CNNM4|COX6C|CPB1|CTNND2|CTSF|CYB5R1|DCXR|DHCR24|DHRS2|DIO1|DNAAF1|DNAJC1|DNAJC12|DNALI1|DUSP5|DZANK1|EEF1A2|ELOVL2|ELOVL5|ERBB4|ESR1|ETNK2|EVL|F7|FAM102A|FAM174B|FAM234B|FBP1|FOXA1|FUT8|GALNT7|GATA3|GDF15|GFRA1|GLI3|GLRB|GLS2|GOLGA1|GP2|GPRC5A|GRIA2|HEBP1|HEXIM1|HHAT|HSPA2|HSPB1|IER3|IFT88|IL6ST|IRS1|IRX5|JUP|KCNJ3|KIAA0040|KIAA0753|KIF16B|LDLRAD4|LRBA|LRIG1|LRP2|MAN2B2|MCCC2|MGMT|MISP|MREG|MRPS30|MST1|MYB|NEDD4L|NME5|NOS1AP|NR2E3|OCEL1|PGR|PIGV|PLAT|PRR15L|PTPN13|PTPRT|PVALB|QDPR|RAMP1|RBKS|RBM47|RPH3AL|SCCPDH|SCUBE2|SEC14L2|SERPINA3|SERPINA5|SERPINB6|SIDT1|SLC9A3R1|SLC16A6|SLC22A4|SLC22A18|SLC27A2|SLC38A1|SORD|SPR|SREBF1|SSH3|SYBU|TBC1D9|TCEAL4|TESMIN|TFF1|TFF3|THNSL2|TJP3|TMEM80|TNNT1|TTC12|WFDC2|XBP1|ZMYND10|ZNF281|ZNF446	30	0.000110174942022	AAR2|AFTPH|ATP9A|BCL11A|BIN1|COL9A3|CXADR|CYP39A1|DDC|DEFB1|FAM171A1|GALNT3|H2AFY2|ID4|KCNK5|KHDRBS3|KRT23|MYLIP|PCDH8|PLS1|PRR13|PRSS23|RBM38|SATB1|SLC5A6|SLC13A3|TOB1|UQCC1|ZMYND8|ZNF217
Human Breast_Doane06_145genes (16491124-SuppTable1)	16	ABAT|ACOX2|ANXA9|AREG|AZGP1|CACNA1D|CCDC170|CYP2B6|DACH1|NAT1|PDZK1|SELENBP1|SEMA3C|SLC4A8|TTC39A|VAV3	0.000147659320171	85	2.18168953314e-92	ACADSB|ADIRF|AGR2|ALCAM|AR|ARMT1|BCL2|BMPR1B|C1ORF21|C9ORF116|CA12|CELSR1|CERS4|CFB|CHAD|CLGN|CLSTN2|CYBRD1|DHRS2|DNAJC12|DNALI1|DUSP4|EEF1A2|ELOVL2|EPS8L1|ERBB4|ESR1|EVL|FBP1|FOXA1|GALNT7|GAMT|GATA3|GDF15|GFRA1|GPRC5A|GREB1|IFT122|INPP4B|KCNE4|KCNK15|KIAA1324|KRT18|MAPT|MAST4|MLPH|MUC1|MYB|MYO6|PBX1|PEX11A|PGR|PIP|PNPLA4|RET|RHOB|RND1|SCCPDH|SCGB1D2|SCGB2A2|SCNN1A|SCUBE2|SERPINA5|SIDT1|SLC7A8|SLC16A6|SLC27A2|SLC39A6|SLC44A4|SPDEF|SSH3|STC2|STK32B|SYBU|SYT1|SYT17|TBC1D9|TFF1|TFF3|TJP3|TNNT1|TOX3|TSPAN1|UGCG|XBP1	1	0.000295318640342	IFT74
Human Breast_Farmer05_269genes__basal_apocrine_luminal (15897907-SuppTable5)	17	ACOX2|ACSF2|ANXA9|CAMK2N1|CEACAM6|FGFR4|FMO5|FXYD3|H1F0|HMGCS2|MSX2|NAT1|PIK3R1|PPM1H|SELENBP1|SEMA3C|VAV3	0.000270638983185	64	2.82656368945e-20	ABCD3|ABLIM1|ACADSB|AKR7A2|ALCAM|ALDH3A2|ATP6V1G1|BLVRA|C16ORF45|CCND1|CFB|COX6C|CRABP2|CRAT|CYB5A|CYBRD1|DHRS7B|DUSP4|ESR1|FBP1|FLNB|GATA3|GRIA2|GSTT1|HEXIM1|HSPB8|IGF1R|IGFBP2|INPP4B|IRS1|JUP|KDM4B|LRBA|MAST4|MCCC2|MED13L|MKNK2|MUC1|NQO1|PBX1|PLAT|PLK2|PNPLA4|PON3|PTPRN2|QDPR|RABEP1|RALGPS1|RHOB|RNASE4|S100P|SCNN1A|SCUBE2|SEC16A|SERPINA1|SIAH2|SLC39A6|TCEAL1|TFAP2B|TFF3|TMEM268|TRPS1|WWP1|XBP1	13	0.000541277966371	ANK3|ANKRD27|CDH1|CYFIP2|EPHX2|GALNT3|GGH|GRB7|HOXB6|ID4|PRKACB|PTPRK|SH3YL1
Human Breast_Loi10_278genes (20479250-TableS4)	13	CEACAM5|CEACAM6|DACH1|GAD1|HMGCS2|MSX2|NAT1|PIK3R1|REEP1|REPS2|SH3BP4|SORL1|SPAG16	2.94155512564e-05	44	3.23353192616e-10	AR|ARNT2|ATP1B1|BCL2|CAP2|CFB|CGA|CRAT|CTNND2|DOPEY2|EHF|ENPP4|ENTPD3|ESR1|EVL|FAM129A|FGFR2|GALNT7|GLRB|GNA14|GOLM1|GPC4|IQGAP2|LEF1|LIMCH1|MUC1|NKX3-1|PFKM|PLAT|PSD3|PYCARD|QSOX1|RAMP1|RET|SASH1|SCGB1D2|SCGB2A2|SERPINA3|TCIM|TFAP2A|TNFSF10|TNIK|TOX3|UCP2	17	5.88307791596e-05	ACSL5|DHTKD1|ENTPD5|GRB7|ID2|ID4|LY75|MYC|MYO10|NOD2|NPAS2|PFDN4|PPFIBP2|SHANK2|SRI|TRAF5|ZBTB10
Human Breast_Muggerud06_232genes (16536878-SuppTable2)	13	ACOX2|ANXA9|BMP4|CEACAM6|ENPP5|FMO5|FXYD3|HMGCS2|MSX2|NAT1|SELENBP1|SEMA3C|VAV3	1.13570162035e-07	35	2.03673083578e-10	ACADSB|ALCAM|ASAH1|ATP6V1G1|BLVRA|CCND1|COX6C|CRAT|CX3CR1|CYB561|ESR1|FBP1|FOXA1|GATA3|IGFBP2|INPP4B|LRBA|MCCC2|MUC1|NQO1|PGR|PLAT|PON3|PTP4A2|PTPRN2|QDPR|RERG|SCNN1A|SIAH2|TCEA3|TCEAL1|TFF3|TLE3|WWP1|XBP1	17	2.26936650987e-07	ADRM1|CDH1|E2F1|EDN1|GGH|GRB7|HOXB5|HOXB6|ID4|ITM2C|MYBL2|MYC|PRKACB|PTPRK|SLC5A6|STK38|UBE2C
Human Breast_Muggerud06_271genes (16536878-SuppTable1)	17	ACOX2|ANXA9|BMP4|CAMK2N1|CEACAM6|ENPP5|FMO5|FXYD3|GPR160|HMGCS2|MSX2|NAT1|REPS2|SELENBP1|SEMA3C|SLC40A1|VAV3	1.14422026994e-06	57	9.9986686881e-17	ACADSB|ADIRF|AFF3|ALCAM|APBB2|ARHGAP35|ASAH1|ATP6V1G1|BCAM|BCL2|BLVRA|CACNA2D2|CCND1|CFB|COX6C|CRAT|CX3CR1|CYB5A|CYB561|ESR1|FAM198B|FAM214A|FBP1|FOXA1|GATA3|HEXIM1|IGFBP2|INPP4B|KDM4B|LRBA|MAST4|MCCC2|MTERF4|MUC1|NPY1R|NQO1|PGR|PLAT|PON3|PTP4A2|PTPRN2|QDPR|RABEP1|RALGPS1|RALGPS2|RERG|SCNN1A|SCUBE2|SHC2|SIAH2|SLC39A6|TCEA3|TCEAL1|TFF3|TLE3|WWP1|XBP1	19	2.28844053979e-06	ADRM1|AURKA|CDH1|E2F1|EDN1|GGH|GRB7|HOXB5|HOXB6|ID4|ITM2C|MYBL2|MYC|PRKACB|PTPRK|RBM38|SLC5A6|STK38|UBE2C
Human Breast_Parker09_161genes_IntrinsicGenes_RTPCR (19204204-SupplementaryTable4)	9	CAMK2N1|CDKN1B|CXXC5|FGFR4|GPR160|NAT1|SEMA3C|SLC40A1|VAV3	0.000213799422552	49	2.75007180342e-21	ACOT4|AGR2|AR|BAG1|BCL2|BLVRA|C16ORF45|CA12|CAPN13|CCND1|CELSR1|COX6C|DNAJC12|DNALI1|ELOVL5|EPN3|ESR1|FAM214A|FBP1|FOXA1|GALNT7|GATA3|HEXIM1|IGFBP2|INPP4B|KIAA1324|KRT8|KRT18|KRT19|LRIG1|MAPT|MDM2|MLPH|MYB|NTN4|PGR|PIP|RABEP1|RARA|REEP6|SCUBE2|SLC9A3R1|SLC39A6|SPDEF|TCEAL1|TMEM25|TMEM45B|TSPAN13|XBP1	11	0.000427598845105	AURKA|BCL11A|CTSV|E2F1|GPSM2|GRB7|ID4|MYBL2|MYC|SLC5A6|UBE2C
Human Breast_Parker09_412genes_IntrinsicGenes_Perou2000 (19204204-SupplementaryTable2)	18	ACOX2|ANXA9|BMP4|CAMK2N1|CEACAM5|FMO5|GAD1|GPR160|NAT1|NEBL|NPNT|PIK3R1|PRLR|REPS2|SELENBP1|SEMA3C|SLC40A1|VAV3	1.27419914194e-07	76	1.02398653772e-15	ABLIM1|ACADSB|AFF3|AGL|AKR7A2|ALCAM|ALDH3A2|ANG|ANKRD50|ARNT2|ATP7B|BCAM|BCL2|BTG2|C16ORF45|CCND1|CELSR2|CFB|COX6C|CRABP2|CRAT|CYB5A|DIO1|DUSP4|ESR1|FAAH|FAH|FASN|FCGBP|FGFR2|FOXA1|GATA3|GFRA1|GJB1|GSTT1|HPN|HSPB8|IGFBP2|INPP4B|IRS1|JUP|KRT8|KRT8P12|LRIG1|MAPK8IP2|MARC1|MAST4|MUC1|MYO6|NEDD4L|NFIA|NQO1|OLFM1|PBX1|PKIB|PLAT|PLK2|PON3|PVALB|RALGPS2|RAP1GAP|S100P|SCUBE2|SERPINA3|SHC2|SIAH2|SLC39A6|STC1|SYT17|TCEA3|TFAP2B|TFF1|TFF3|TRPS1|WFDC2|XBP1	32	2.54839827364e-07	ANKRD27|BMP7|CDH1|CHGB|DGAT2|DIDO1|DMD|EPHX2|F2RL1|GALNT3|GGH|GNAS|GRB7|HOXB6|ID4|ITGA2|MFAP3L|MYBL2|MYC|MYCL|OCLN|PPARG|PRKACB|PRSS23|PTPRK|RBM38|SLC5A6|SMOC2|TOB1|TSPAN7|ZNF217|ZNFX1
Human Breast_Parker09_498genes_IntrinsicGenes_Perreard2006 (19204204-SupplementaryTable3)	19	ACOX2|ANXA9|BMP4|CAMK2N1|CEACAM5|FGFR4|FMO5|FXYD3|H1F0|HMGCS2|MSX2|NAT1|NPNT|PIK3R1|PPM1H|REPS2|SELENBP1|SEMA3C|SLC40A1	0.000106911713498	81	1.03753199496e-13	ABCD3|ABLIM1|ACADSB|AKR7A2|ALCAM|ALDH3A2|ANG|ARHGAP35|ASAH1|ATP6V1G1|BCAM|BLVRA|C16ORF45|CCND1|CFB|COX6C|CRABP2|CRAT|CTDSPL|CYB5A|CYBRD1|DUSP4|ESR1|FAM214A|FLNB|FOXA1|FOXA3|GATA3|GRIA2|GSTT1|HSPB8|IGFBP2|INPP4B|IRS1|KLHL42|LIPH|LMAN2L|LRBA|MAST4|MGST2|MKNK2|MST1|MUC1|NFKBIZ|NPY1R|NQO1|NUMA1|PBX1|PLAT|PLK2|PON3|PTPRN2|PTPRT|QDPR|RABEP1|RALGPS1|RALGPS2|RERG|RGL2|S100P|SCNN1A|SHC2|SHROOM3|SIAH2|SLC39A6|ST6GALNAC2|STEAP2|TCEA3|TCEAL1|TFAP2B|TFF1|TFF3|TLE3|TMEM45B|TMEM268|TRPS1|UGT2B15|WFDC2|WWP1|XBP1|ZNF516	28	0.000213823426892	ADRM1|ANK3|ANKRD27|ARFRP1|BEX2|CDH1|CHGB|CTSH|CYFIP2|DIDO1|GALNT3|GGH|GNAS|GRB7|HOXB5|HOXB6|ID4|ITGA2|ITM2C|NPAS2|PRKACB|PRSS23|PTK7|PTPRK|RANBP6|SLC5A6|STK38|TOB1
Human Breast_Parker09_500genes_IntrinsicGenes_SorlieAnnot (19204204-SupplementaryTable9)	22	ACOX2|ACSF2|BMP4|CAMK2N1|CEACAM6|DUSP16|ENPP5|FGFR4|FMO5|FXYD3|H1F0|HMGCS2|MSX2|NAT1|NPNT|PIK3R1|PPM1H|REPS2|SELENBP1|SEMA3C|SLC40A1|VAV3	5.50874710112e-05	86	4.3322330528e-16	ABCD3|ABLIM1|ACADSB|AKR7A2|ALCAM|ALDH3A2|ANG|APBB2|APH1B|ARHGAP35|ASAH1|ATP6V1G1|BCAM|BLVRA|C16ORF45|CCND1|CFAP69|CFB|CNTD1|COX6C|CRAT|CYB5A|DHRS7B|DUSP4|ESR1|FAM214A|FBP1|FLNB|FOXA1|FOXA3|GATA3|GRIA2|GSTT1|HEXIM1|HSPB8|IGF1R|IGFBP2|INPP4B|IPPK|IRS1|ITPRIPL2|KDM4B|KLHL42|LIPH|LMAN2L|LRBA|MAST4|MCCC2|MEAF6|MED13L|MGST2|MKNK2|MST1|MUC1|NFKBIZ|NPY1R|NQO1|PLAT|PLK2|PNPLA4|PON3|PTP4A2|PTPRN2|QDPR|RABEP1|RALGPS1|RERG|RGL2|S100P|SCNN1A|SCUBE2|SEC16A|SHC2|SHROOM3|SIAH2|SLC39A6|STEAP2|TCEA3|TCEAL1|TFAP2B|TFF3|TLE3|TMEM268|TRPS1|WWP1|XBP1	27	0.000110174942022	ADRM1|ANK3|ANKRD27|ARFRP1|BEX2|CDH1|CHGB|CTSH|CYFIP2|DIDO1|EPHX2|GALNT3|GGH|GRB7|HOXB5|HOXB6|ID4|ITM2C|LINC01315|NPAS2|PRKACB|PRSS23|PTPRK|RANBP6|SLC5A6|SRSF6|STK38
Human Breast_Parker09_501genes_IntrinsicGenes_Sorlie2003 (19204204-SupplementaryTable6)	21	ACOX2|ANXA9|BMP4|CAMK2N1|CEACAM5|ENPP5|FGFR4|FMO5|FXYD3|H1F0|HMGCS2|MSX2|NAT1|NPNT|PIK3R1|PPM1H|REPS2|SELENBP1|SEMA3C|SLC40A1|VAV3	5.27145056608e-05	82	6.65747632152e-15	ABCD3|ABLIM1|ACADSB|AKR7A2|ALCAM|ALDH3A2|ANG|APH1B|ARHGAP35|ASAH1|ATP6V1G1|BCAM|BLVRA|C16ORF45|CCND1|CFB|COX6C|CRABP2|CRAT|CYB5A|CYBRD1|DHRS7B|DUSP4|ESR1|FAM214A|FBP1|FLNB|FOXA1|FOXA3|GATA3|GRIA2|GSTT1|HEXIM1|HSPB8|IGFBP2|INPP4B|IPPK|IRS1|KLHL42|LIPH|LMAN2L|LRBA|MAST4|MCCC2|MGST2|MKNK2|MST1|MUC1|NFKBIZ|NPY1R|NQO1|NUMA1|PBX1|PLAT|PLK2|PNPLA4|PON3|PTPRN2|QDPR|RABEP1|RALGPS1|RALGPS2|RERG|RGL2|S100P|SCNN1A|SCUBE2|SHC2|SHROOM3|SIAH2|SLC39A6|STEAP2|TCEA3|TCEAL1|TFAP2B|TFF3|TLE3|TMEM268|TRPS1|WWP1|XBP1|ZNF516	27	0.000105429011315	ADRM1|ANK3|ANKRD27|ARFRP1|BEX2|CDH1|CHGB|CTSH|CYFIP2|DIDO1|EPHX2|GALNT3|GGH|GRB7|HOXB5|HOXB6|ID4|ITM2C|LINC01315|NPAS2|PRKACB|PRSS23|PTK7|PTPRK|RANBP6|SLC5A6|STK38
Human Breast_Rouzier05_298genes_4classes (16115903-TableS1)	22	ABAT|ANXA9|C5ORF30|CAMK2N1|CEACAM5|CEACAM6|CERS6|CYP2B6|DACH1|DBNDD2|ERBB3|FGFR3|FXYD3|GALNT6|NAT1|PDZK1|REEP1|RETREG1|SEMA3C|SH3BP4|TTC39A|VAV3	1.57359407928e-05	117	4.6163229483e-61	ACADSB|ADCY1|ADCY9|ADIRF|AGR2|AKR7A3|ALCAM|APBB2|AR|ARMT1|ASAH1|BCAM|BCL2|BHLHE40|BLVRA|C16ORF45|CA12|CADPS2|CANT1|CELSR1|CELSR2|CLGN|COX6C|CPB1|CRIP2|CSAD|CYB5A|CYB5R1|CYB561|DCXR|DNAJC12|DNALI1|ECI2|EEF1A2|ELOVL2|ELOVL5|ENPP1|ERBB4|ESR1|EVL|FAM198B|FBP1|FLNB|FOXA1|FUT8|GALNT7|GATA3|GDF15|GFRA1|GLUL|GPRC5A|GREB1|HEBP1|HSPB1|IGF1R|IL6ST|IRS1|JUP|KAT6B|KCNK15|KIAA1324|KIF16B|KRT8|KRT18|LRIG1|MAGED2|MAPT|MCCC2|MED13L|MLPH|MREG|MRPS30|MUC1|MYB|NPDC1|NPY1R|NQO1|NRIP1|PBX1|PTP4A2|RHOB|S100P|SCCPDH|SCNN1A|SCUBE2|SEC14L2|SEMA3F|SERHL2|SERPINA5|SH3GLB2|SIAH2|SLC1A4|SLC2A10|SLC16A6|SLC19A2|SLC39A6|SLC44A4|SPDEF|SREBF1|STC2|SYBU|SYT1|TBC1D9|TCEAL1|TESMIN|TFF1|TFF3|TMBIM6|TOX3|TPBG|TSC22D3|TSPAN1|TSPAN13|UGCG|UGDH|WWP1|XBP1	14	3.14718815856e-05	CYP39A1|FAM171A1|FAT1|GLS|GRB7|ID4|KRT23|MPZL2|MYC|PLAGL1|PLIN2|SATB1|SERPINE2|TOB1
Human Breast_Sorlie03_552genes_IntrinsicGeneList (12829800-IntrinsicList)	23	ACOX2|ACSF2|ANXA9|BMP4|CAMK2N1|CEACAM6|DUSP16|ENPP5|FGFR4|FMO5|FXYD3|H1F0|HMGCS2|MSX2|NAT1|NPNT|PIK3R1|PPM1H|REPS2|SELENBP1|SEMA3C|SLC40A1|VAV3	5.5087471011e-05	88	2.36515603881e-17	ABCD3|ABLIM1|ACADSB|AKR7A2|ALCAM|ALDH3A2|ANG|APBB2|APH1B|ARHGAP35|ASAH1|ATP6V1G1|BCAM|BLVRA|C16ORF45|CCND1|CFAP69|CFB|CNTD1|COX6C|CRABP2|CRAT|CYB5A|CYBRD1|DHRS7B|DUSP4|ESR1|FAM198B|FAM214A|FBP1|FLNB|FOXA1|FOXA3|GATA3|GRIA2|GSTT1|HEXIM1|HSPB8|IGFBP2|INPP4B|IPPK|IRS1|ITPRIPL2|KDM4B|KLHL42|LIPH|LMAN2L|LRBA|MAST4|MCCC2|MEAF6|MED13L|MGST2|MKNK2|MST1|MUC1|NPY1R|NQO1|NUMA1|PBX1|PLAT|PLK2|PNPLA4|PON3|PTPRN2|QDPR|RABEP1|RALGPS1|RALGPS2|RERG|RGL2|S100P|SCNN1A|SCUBE2|SEC16A|SHC2|SHROOM3|SIAH2|SLC39A6|STEAP2|TCEA3|TCEAL1|TFAP2B|TFF3|TLE3|TMEM268|TRPS1|XBP1	26	0.000110174942022	ADRM1|ANKRD27|ARFRP1|BEX2|CDH1|CHGB|CTSH|CYFIP2|DIDO1|EPHX2|GALNT3|GGH|GRB7|HOXB5|HOXB6|ID4|ITM2C|LINC01315|PRKACB|PRSS23|PTK7|PTPRK|RANBP6|SH3YL1|SLC5A6|STK38
Human Breast_Wirapati08_288genes_ESR1_Module (18662380-S3-ESR1)	24	ABAT|ANXA9|BCAS4|C5ORF30|CCDC170|CXXC5|CYP2B6|DACH1|DCAF10|ERBB3|GPD1L|INPP5J|NAT1|NECAB3|PARD6B|PDZK1|PIGT|PRR15|REPS2|RETREG1|RNF103|SLC22A5|VAV3|WFS1	3.87557947738e-05	129	2.5503240956e-74	ACADSB|ADCY9|ADIRF|AFF3|AGR2|AGR3|AKR7A3|APBB2|AR|ARL3|ARMT1|BCL2|C9ORF116|CA12|CACNA2D2|CCDC96|CCND1|CELSR1|CELSR2|CERS2|CHAD|CISH|CLSTN2|COX6C|CPEB2|CSAD|CYB5R1|DNAJC12|DNALI1|EEF1A2|EFHC1|ELOVL2|ERBB4|ESR1|EVA1B|EVL|FAAH|FAM174B|FAM214A|FAM234B|FBP1|FOXA1|FUT8|GAMT|GATA3|GFRA1|GREB1|HHAT|HMGCL|HPN|IFT88|IGF1R|IL6ST|INPP4B|IRS1|IRX5|KCNK15|KCTD6|KDM4B|KIAA0040|KIAA0232|KRT18|LONRF2|LRBA|LRRC6|MAGED2|MAPT|MCCC2|MED13L|MISP|MLPH|MREG|MYB|NECTIN2|NKAIN1|NME5|NPDC1|P4HTM|PREX1|PTP4A2|QDPR|RAB17|RABEP1|RALGPS1|RARA|RBKS|RBM47|RERG|RHOB|RMND1|RMND5B|SALL2|SCCPDH|SCNN1A|SCUBE2|SERPINA5|SIAH2|SLC9A3R1|SLC16A6|SLC19A2|SLC22A18|SLC27A2|SLC39A6|SPDEF|SSH3|STARD10|STC2|SUSD3|SYBU|TBC1D9|TCEAL1|TCEAL4|TCTN1|TESMIN|TFF1|TFF3|THSD4|TJP3|TMBIM4|TMBIM6|TMC4|TPBG|TPRG1|TSPAN1|TSPAN13|UGCG|WWP1|XBP1|ZMYND10	11	7.75115895476e-05	BCL11A|FAM171A1|FAT1|ITM2C|MYO10|NCK2|PLAGL1|PLIN2|SEL1L3|SLC5A6|TOB1
Human Breast_Yau07_145genes (17850661-TableS3)	11	AREG|CCDC170|COBLL1|DACH1|DCAF10|ESRRG|GAD1|HMGCS2|REEP1|RETREG1|SERPINA6	3.39586066283e-06	35	7.85684591269e-15	ALDH3B2|ANG|ARNT2|C1ORF115|CELSR2|COL4A6|CYB5A|ENTPD3|ESR1|FAM234B|FASN|FLRT3|GATM|GPC4|GREB1|IQGAP2|JUP|LEF1|LIMCH1|LRP2|MSMB|RAI2|RNASE4|S100A14|SASH1|SC5D|SCGB1D2|SCGB2A1|SCGB2A2|SERPINA1|SERPINA5|SLC25A12|SYNC|TNFSF10|WWOX	11	6.79172131781e-06	AURKA|CSE1L|EFNA1|ENTPD5|HOXB5|HOXB6|KRT23|MANSC1|PPFIBP2|RHOBTB3|SLC26A2
Human Colon_Dessein10_744genes (20460542-SuppTable1)	17	AREG|BBS5|CCDC24|CNTNAP2|CYP2B6|ENPP5|FGFR3|GALNT6|HMGCS2|NOSTRIN|PDZK1|PROM2|REPS2|RNF44|SELENBP1|SLC12A2|UNC5CL	4.57188380175e-07	105	1.60295426255e-09	ABCA2|ABCC5|ABCC8|ABLIM1|ACADSB|ADAMTS13|ADAMTSL5|ADGRL1|AFF1|AGR3|AGT|ANG|ARHGEF37|ARSD|ASTE1|ASTN2|ATP1B1|ATP7B|BCAS1|BCOR|BLVRA|BTG2|CACNB3|CAPN9|CAPN13|CCDC191|CDRT4|CELSR2|CEP126|CHRD|D2HGDH|DEPTOR|DGKD|DLG5|DQX1|DZIP3|ECI2|EEF1A2|EVL|FAM83E|FCGBP|FGFR2|GAMT|GGT6|GOLGB1|GPC1|GPC4|HGD|HHAT|HIVEP3|IGFBP2|KAT6B|KLHDC9|L3MBTL1|LIPH|LONRF2|LRRC23|LRRC27|MAMDC4|MARC1|MARC2|MEGF9|MELTF-AS1|MLPH|MRPL43|MST1|MUC1|NOXA1|NPDC1|NPHP1|NUDT16|PCSK4|PDE4A|PGPEP1|PKIB|PLEKHA6|PLIN5|PON2|PRODH|PRRT2|PSD3|REEP6|RNASE4|RSPH1|SDR16C5|SEC16A|SHTN1|SNX25|SPEF2|SYTL2|TACC2|TCEA3|TCEAL4|TCTN1|TMC5|TNNI3|TNNT1|TOX3|TP53I11|TP53INP1|TPRG1|TRAF3IP1|TRERF1|USP54|ZNF91	57	9.12773806087e-07	ABCC2|AKAP7|AMT|ASCL2|BAMBI|BICRAL|CABLES2|CDCA7|CEMIP|CKB|CLDN23|COL9A3|CTSV|DDC|DIDO1|DLX4|DPEP1|EFNA1|EPB41L2|EPHB2|EPHB3|EPHX2|FABP6|FAM105A|HEATR5B|HOXB5|KBTBD11|KCNQ1|KHK|KRCC1|LARGE2|LGALS2|MECOM|MYEF2|MYO10|MYO15B|NR0B2|PALD1|PAQR8|PIGZ|PPFIBP2|RAB32|RCN1|SLC3A1|SLC25A27|SLC39A5|ST6GAL1|TBXAS1|TFCP2L1|TMC7|TRAF5|TSC22D2|USF3|VIL1|ZC4H2|ZDHHC23|ZNF514
Human Embryo_Heim07_273genes (17880687-TableS4)	7	CNTNAP2|GALNT6|LNX1|MSX2|SP5|TBX3|ZNF703	0.000203328884846	30	0.000242716227671	AP1M2|ASPH|CA12|CARD10|CCND1|CORO2A|CTXN1|DEPTOR|DNAJC1|DUSP10|ENPP1|EPB41L4A|FAM110B|FOXN4|IQGAP2|IRS1|LIMCH1|MARVELD2|MCOLN3|NFIA|OTUD7B|PBX1|RET|SLC16A5|SLC22A23|SUSD3|TNRC18|TOX3|TSHZ1|ZADH2	19	0.000163941542021	AK4|AKAP7|CCDC186|F2RL1|HOXB3|HOXB5|HOXB13|ID4|KLF7|NR5A2|NR6A1|PPFIBP2|PRAC2|PRSS23|RBP1|SERINC5|SOX4|TCF7|TRAF5
Human Embryo_Heim07_1515genes (17880687-TableS3)	21	ARHGAP44|BMP4|CAMK2N1|CBX4|CDKN1B|CNTNAP2|DACH1|EPB41L1|ERBB3|GAD1|LNX1|MSX2|PABPC1L|RGMB|SH3BP4|SHROOM2|SPRED2|TBX3|TUFT1|VAV3|ZNF703	7.95014323477e-05	115	0.000158863539865	ACVR2B|AFF3|AGL|ANXA11|APBB2|AQP11|ARHGAP29|ATP1B1|B3GAT1|BCL6|BCOR|BLVRA|BTG2|C6ORF141|CARD10|CDS1|CGN|CORO2A|CRABP2|CREB3L1|DEPTOR|DGKQ|DHX32|DLX2|DUSP5|DUSP10|ENPP1|FAM110B|FAM174B|FAM214A|FASN|FLNB|FOXA3|FOXN4|FOXO6|GATA3|GLRB|GLS2|GOLGA1|GPRC5A|GREB1L|HES1|HIVEP3|HOXD4|HSPB8|HTR7P1|ICA1L|IFT22|IL6ST|ING5|IQGAP2|IRX2|ISYNA1|ITPK1|ITPR2|KANSL3|KLHDC7A|LDLRAD4|LFNG|LIMCH1|MAGI2|MARC2|MARVELD2|MDM2|MED13L|MGST2|MTCL1|MYRFL|NFIA|NRIP1|OLFM1|PBX1|PDLIM1|PGPEP1|PHYHD1|PLEKHA6|PPP1R13B|PREX1|PRRT3|PYCARD|RAB3B|RAB15|RAB38|RARA|RBM47|RBPJ|REEP6|RET|RHBDL3|RMST|RND1|SERPINB6|SLC10A4|SLC16A5|SLC22A23|SLC25A29|STK36|SUSD3|SYTL2|TACC2|TCEAL3|TCERG1L|TFAP2A|THSD4|TMEM135|TNRC18|TOX3|TRH|TRIM45|TRPS1|TSHZ1|TTC39C|ZADH2|ZNF281|ZNF436-AS1	79	1.39324830347e-07	ACOX1|ADCY3|AK4|AKAP7|AMOTL2|AXIN2|BAMBI|BCL2L1|BEND7|BTBD11|CDX2|CFTR|CHDH|CHN2|CHRM3|COL9A3|DIDO1|EDN1|EPB41L2|EPB41L4B|EPCAM|EPHB3|F2RL1|FAM13A|FAM213A|FGD4|FZD5|GNG4|HOXB3|HOXB4|HOXB5|HOXB13|HUNK|ID2|KLF7|KLHL29|LRMDA|MARVELD3|MECOM|MPZL3|MYLIP|NDRG2|NEURL2|NR6A1|OGG1|PIP4P2|PLAGL1|PLIN2|PLPP6|PPFIBP2|PRAC2|PROSER2|PRSS23|PRUNE2|RBM39|RBP1|RHOU|RNF114|RTKN|SATB1|SEL1L3|SEMA3A|SETD9|SH3BGRL2|SHANK2|SLC13A3|SLC16A9|SLC44A1|SMAD6|SMAD7|STRA6|TCF7|TMEM41B|TMEM56|TOB1|TSPAN12|VENTX|ZMYND8|ZNF503
Human InVitro_Bild06_298genes (16273092-TableS1b)	9	ARFGEF3|C5ORF30|CAMK2N1|CXXC5|FAM222A|FGFR3|REEP1|RETREG1|ZNF703	0.000339855400955	33	0.000471206177388	ADGRB2|AKT1|ATRNL1|BCOR|CCNO|CDC20B|DGKQ|DIS3L|EEF1A2|ENO2|EPB41L4A|FRAT1|GLRB|KCTD6|KDM4B|KISS1R|LRIG1|LYPD6|MANEAL|MBOAT1|MYB|RAB15|RASEF|SCNN1A|SLC9A3R1|SLC16A6|SLC25A12|SREBF1|TBC1D9|TPPP|TRIM3|TSHZ1|ZBTB42	20	0.000208504624522	ADCY3|AK4|CEBPA|DDAH1|EPB41L4B|FAM171A1|FOXQ1|GNAS|IL17RB|KHDRBS3|LRP4|NOL4L|RIPPLY3|SBK1|SMAD6|SRSF6|TAF4|TMEM106C|TSPAN5|ZDHHC23
Human Lung_Coldren06_305genes (16877703-TableS2)	16	ANXA9|ARFGEF3|COBLL1|ENPP5|ERBB3|FXYD3|GPR160|LNX1|MPP7|NPNT|OVOL1|REPS2|SLC35A3|SPOPL|SYNE4|VAV3	1.12433700196e-09	50	1.39381730569e-15	AGR2|AIG1|AP1M2|C1ORF21|CAPN8|CCDC57|CCDC115|CCDC149|CDS1|CGN|CST6|DOK7|EHF|ENPP4|EPS8L1|FOXA1|HMGCL|KIAA0040|KIAA1211L|KRT19|LIPH|LRG1|MBOAT1|MYO6|PRR15L|PRRG2|PSD4|PTK6|QSOX1|RAB38|RASEF|RBM47|RHOD|S100A14|S100A16|SLC1A1|SPINT1|SPTLC3|STARD10|STK39|SYTL1|SYTL5|TC2N|TJP3|TMC4|TMC5|TMEM45B|TMEM125|TSPAN1|ZNF91	23	2.24867261011e-09	CDH1|ERP27|EXPH5|FGD4|GALNT3|GNAS|KCNMB4|KRT15|MAPK13|MARVELD3|MFSD6|MPZL2|MPZL3|OCLN|PLEKHA7|RNF114|SH3BGRL2|SH3YL1|SLC44A3|SRPX2|ST14|WFDC3|ZDHHC21
Human Lung_Hou10_518genes (20421987-TableS4)	11	ARHGAP44|DACH1|ENPP5|ERBB3|ESRRG|FMO5|GOLT1A|NOSTRIN|PBLD|SDC4|SYNE4	4.73488854089e-05	68	2.82498819631e-09	ABCC5|ADCY1|AGR2|AGR3|C1ORF210|CAPN8|CBLN2|CDS1|CFB|CGN|COBL|COL4A5|COL4A6|CST6|DHCR24|DNAH5|DNALI1|EFCAB2|ELOVL2|ENPP4|FAM110B|FOXA1|FOXJ1|GCHFR|GDAP1|GLCCI1|GOLM1|GPRC5A|HES2|HPN|INPP4B|INSM1|JUP|KIAA1211|KRT18|KRT19|LIMCH1|LYPD3|MAST4|MLPH|MUC1|NECTIN2|NTN4|PDE11A|PLLP|PON2|PON3|PRR15L|RAB17|RAB27B|RAB38|RORC|S100A14|S100A16|S100P|SLC1A4|SLC44A4|SPDEF|STC2|STON2|SYTL1|TFAP2A|TJP3|TMC5|TMEM125|TPRG1|WDR66|WDR72	32	9.46949458297e-05	ACSL5|AMOTL2|AURKA|BCL2L15|BCL11A|CBFA2T2|CHGB|CLDN1|DDAH1|DMRT2|F2RL1|FAM13A|FAM83D|FZD5|GNG4|ID4|KCNK5|KRT15|MEX3A|MYEF2|OCLN|PLS1|PPARG|PPP1R14C|PPP1R14D|PROX1|RHOU|RPS21|TGM2|TPX2|UBE2C|XKRX
Human MesenchymalStemCells_Yamamoto08_1252genes (18318837-TableS1)	32	ABCC6|ANXA9|AREG|AZGP1|CXXC4|CYP4F11|DACH1|DCAF10|ENPP3|ENPP5|ERBB3|FAM3B|FGFR3|FYB2|GGTLC1|GOLT1A|HMGCS2|LRRC31|MGAT4A|NEBL|NMNAT3|PAH|PARD6B|PDZK1|REPS2|RETREG1|RNF43|SERPINA6|SLC40A1|TMEM150C|TTC39A|UNC5CL	3.50159210728e-12	120	7.00296472608e-12	ABCA12|ABCC11|ABLIM1|ABLIM2|ACMSD|ACSM1|ADCY1|AGT|ALDH8A1|AMDHD1|AMIGO1|APOF|BCAS1|C1ORF115|C1ORF226|C2ORF15|C5|C6ORF141|CCDC120|CELSR1|CERS4|CFB|CGNL1|CISH|COBL|COL4A5|COL4A6|CYP4B1|CYP21A2|DCDC2|DDO|DIO1|DNAH5|DNAJC12|DOK7|DYDC2|EEF1A2|ETNK2|ETNPPL|F7|FAAH2|FAM174B|FBP1|FBXO2|FGF13|FLRT3|FOXA1|GATM|GJB1|GLYATL1|GPRC5C|GUCY1A2|HES2|HGD|HPN|HPX|IGFALS|IGFBP2|IQGAP2|JUP|KIAA1211|KIF5C|KIF12|KRT8|LDLRAD4|LIPH|LONRF2|LRG1|LRP1B|LRP2|MARVELD2|MS4A7|MST1|MUM1L1|MYRF|NEDD4L|P2RY2|PCSK4|PCSK6|PKHD1|PKIB|PLEKHA6|PRKAA2|PRR15L|PSD4|RAB3D|RAB17|RALGPS1|RASEF|RBM47|RND1|S100A14|SERPINA1|SERPINA3|SERPINA5|SERPINC1|SLC9A3R1|SLC23A1|SLC27A2|SPINT1|STARD10|STON2|SUSD3|SYNGR2|SYT12|SYT17|TC2N|TCIM|TESMIN|TMC5|TMC6|TMEM45B|TNFSF10|TSPAN15|UGT2B15|UGT2B17|UGT2B28|WDR72|WWC1|ZNF385B	84	2.19488472284e-16	A1CF|ABCB1|ABCB4|ABCC2|ACE2|ACTR3C|ACVRL1|AIFM3|APCDD1|ARL14|C9|CDH1|CDX2|CLDN1|CLRN3|CTSH|CXADR|CYP4F2|CYP39A1|DEFB1|DENND2A|DIO3|EFNA1|EPCAM|EPHX2|ERP27|F10|FABP1|FAM213A|FZD5|GAS2|GCG|GPX2|HSD11B2|IFNLR1|IL17RB|ISX|ITGA9|KANK1|KCNQ1|KHK|KNG1|LEAP2|LEFTY1|LGALS2|LRMDA|METTL7B|MEX3A|MPZL2|NDRG2|NR0B2|NR1I2|NSUN7|OCLN|OGDHL|PCK1|PDE3B|PDE9A|PLA2G12B|PLS1|PRAP1|PROSER2|PROX1|RBP1|RUNDC3B|SGK2|SHANK2|SKAP1|SLC2A8|SLC19A3|SLC26A2|SLC44A3|SMOC2|SOSTDC1|SSUH2|ST6GAL1|ST14|SULT1B1|TLE2|TM4SF5|TMEM56|TSPAN7|UGT2A3|VIL1
Human Stomach_Zhao09_168genes (19306436-TableS2b)	6	C5ORF30|FMO5|MAGI3|PRLR|PROM2|SELENBP1	0.00054550652783	25	0.00034152263426	ADAMTS15|ADIRF|AKR7A3|ANG|C1ORF115|CACFD1|CAPN9|CAPN13|COL4A6|CYB5A|CYB5D2|DGKD|DISP1|FAM102A|FBP1|FCGBP|HMGCL|IDNK|LYPD6B|PLLP|PPP1R36|RETSAT|RORC|TSPAN1|ZBTB7C	15	0.000749490421399	ABHD6|APOBEC1|CES2|CHGA|CYP2S1|ENTPD5|EPB41L4B|EPHX2|KRT20|SCNN1B|SGK2|SLC16A9|SMPD3|SOSTDC1|SULT1B1
LIM_MAMMARY_STEM_CELL_DN	16	ARFGEF3|C11ORF52|CHPT1|DBNDD2|ERBB3|H2AFJ|HDAC11|NAT1|PPM1H|PRLR|SERINC3|SLC35A3|SORL1|SULT2B1|TUFT1|WNK4	0.000110038219614	92	7.57543805037e-19	ACOT4|ALDH3B2|ALKBH6|AP1M2|ARMT1|ARRDC1|ASB8|ATP1B1|BNIPL|C1ORF210|CACFD1|CAMSAP3|CCDC125|CGN|CGNL1|CHCHD5|CIB1|COBL|CORO2A|CREB3L4|CTPS2|DHCR24|DHRS4|DHX32|DLG3|DNAJC12|ENPP4|ESR1|FAAH|FGF13|FOXA1|GATA3|GLUL|GOLM1|HDAC10|HID1|HPN|IQGAP2|IVD|KIAA1324|KRT8|KRT18|KRT19|LIPH|LRBA|LYPD3|MAP3K1|MBOAT1|MCCC2|MLPH|MTA3|MUC1|OSBPL10|P2RX4|PCBD2|PEX11G|PGAP2|RAB3IP|RAB5B|RALGPS1|RBM47|REEP6|RORC|RREB1|SFXN1|SHTN1|SIDT1|SLC9A3R1|SLC16A5|SLC22A18|SLC25A35|SLC35D2|SLC39A11|SLC44A4|SMIM1|SPDEF|SPINT1|SSH3|STARD10|STXBP2|SYTL4|TFAP2A|THNSL2|TJP3|TMC4|TMED3|TMEM125|TMEM128|TMEM135|VIPR1|WDR31|WFDC2	29	0.000220076439227	ACOT8|ACOT13|ADD3|ANO9|CD24|CDH1|CEACAM1|CLDN1|CLDN8|CMAS|DEFB1|DERA|EDEM2|EPCAM|GRB7|ILDR1|MANSC1|MAPK13|MARVELD3|NEU1|PLPP6|PPFIBP2|PRR13|SLC5A6|ST14|TFCP2L1|TGM2|TMEM56|TRIM68
MASSARWEH_TAMOXIFEN_RESISTANCE_DN	12	ABAT|AREG|FYB2|NPNT|PABPC1L|PARD6B|PDZK1|PIK3R1|PRLR|SLC22A5|TTC39A|ZNF703	0.000110340690124	81	2.45215387185e-30	ADAMTS15|ADAMTS19|ADCY9|APBB2|ARHGAP36|ARL3|ARMT1|ATRNL1|BCL2|BLVRA|BOD1|C1ORF226|CA12|CELSR2|CISH|COL4A5|COPS9|CTPS2|DEPTOR|DLG5|DOK7|DUBR|ELOVL2|ELOVL5|ELP2|ESR1|ETNK2|FLNB|GCHFR|GFRA1|GREB1|HIP1|IGF1R|IGSF1|IL20|IRS1|IRX3|IRX5|ISOC1|KCNJ3|KDM4B|LARGE1|LETM2|LONRF2|LRIG1|MAPT|MEGF9|MREG|MYB|NAB2|NPY1R|NRIP1|OLFM1|PDLIM1|PGR|PKIB|PLIN5|PYCARD|RBM24|RERG|RMST|RXRA|SAMD15|SERPINA5|SFXN2|SIAH2|SLC1A4|SLC39A6|STARD13|STC1|SUSD3|SYBU|SYT1|SYT12|SYTL4|THSD4|TIPARP|TMEM164|TNNT1|TPBG|ZNF385B	18	0.000220681380247	ADD3|DARS|DDAH1|FGFRL1|FOXO3|FREM2|HNMT|IL17RB|METTL7B|PRSS23|PSMG1|PTGR1|RHOBTB3|SLC26A2|SOX4|SRI|TMCO6|ZBTB10
MASSARWEH_TAMOXIFEN_RESISTANCE_UP	18	ABCC6|ARFGEF3|CEACAM6|COBLL1|DRAIC|FXYD3|GPR160|HMGCS2|LNX1|MGAT4A|NEBL|PROM2|RNF103|SH2D4A|SH3BP4|SLC12A2|TMEM87B|ZNF827	1.75172892356e-07	104	4.9581500876e-15	ABCC5|ADIRF|ALCAM|AR|ARHGAP35|ARHGEF37|ARRB1|ASPH|BBS4|BCAM|BCAS1|BCL6|CADPS2|CANT1|CCDC149|CDS1|CGN|CRISP3|CYB561|DLX1|EPB41L4A|EPN3|EPS8L1|ERBB4|FAM129A|FAM149A|FAM198B|FAM234B|FFAR2|FGF13|FOXA3|FSIP1|GADD45G|GATA2|GLCCI1|GPR39|GREB1L|HEXIM1|HID1|HTR7P1|IDNK|IER3|INPP4B|IQGAP2|KCNMA1|KIAA0485|LIMCH1|LRPAP1|LRRC8E|LURAP1L|LYPD3|MTA3|MTERF4|MUC1|MUM1L1|NANS|NCEH1|NFIA|OTUD7B|P2RY2|PBX1|PBX3|PIP4K2C|PLEKHS1|PP14571|PREX1|PRODH|PRR15L|PRRT3|PTK6|PTPN13|RAB27B|RAI2|RBKS|RND1|RORC|S100A14|S100P|SASH1|SCCPDH|SEC16A|SERHL2|SH3BGRL|SMIM14|SRARP|TACC2|TADA2B|TAPT1|TBC1D30|TCEA3|TMEM45B|TMEM135|TNFSF10|TP53INP2|TRAK1|TRIM62|TSPAN1|TTC9|UNC13B|USP54|VPS13B|WWC1|YIPF1|ZNF839	48	3.50345779754e-07	ANK3|BAMBI|BEX2|CD46|CD164|CDC37L1|CERK|DIDO1|DNM3|EDN1|EPB41L2|EPB41L4B|FAM13A|FAM84A|FAM210B|GALNT3|GFPT1|GPR157|KANK1|KLHL9|LGALSL|LRRC1|MANSC1|MFAP3L|MFSD6|MPZL2|MPZL3|MYCL|PAPD5|PARM1|PCTP|PITX2|PLEKHA7|PLPP6|PPFIBP2|PSTPIP2|ROCK2|SHANK2|SPAG1|SPTY2D1|STK38L|TM9SF3|TMEM8B|TMEM41B|TRAF5|UQCC1|USP53|WIPI1
MCBRYAN_PUBERTAL_BREAST_4_5WK_UP	10	AREG|DUSP16|ERBB3|FHDC1|FXYD3|HDAC11|PRLR|PROM2|RETREG1|SDC4	0.00013349066955	37	0.000207569358767	BCL6|BEX1|C1ORF210|CITED1|CNTD1|CYB561|EHF|FGFR2|FOXA1|GATA3|IGFBP2|IRX2|IRX3|IRX5|ISYNA1|KIAA1324|KRT8|KRT18|KRT19|MBOAT1|MYB|PATJ|PLAT|PLK2|POF1B|RAB17|SHROOM3|SLC39A6|SPINT1|STARD10|STC2|TLE3|TMED3|TPBG|TRPS1|WFDC2|WWC1	23	5.94119803329e-05	ATP1A1|CD24|CDH1|CEACAM1|CLDN8|EPB41L4B|EPCAM|GALNT3|ID2|ID4|MANSC1|OCLN|PADI2|PTPRK|RBP1|RPS21|SESN3|SOX4|ST14|TEAD2|TGM2|TMEM56|TTPA
MODULE_139	9	ANXA9|ERBB3|GPR160|MSX2|NEBL|PRLR|SELENBP1|SULT2B1|VAV3	3.18069840344e-05	29	4.64881014656e-18	AGR2|ANKRD50|BCAM|CRABP2|CYB5A|FBP1|FOXA1|GATA3|IRX5|ISOC1|KRT8|KRT18|KRT19|MLPH|MUC1|MYO6|PRR15L|RERG|RHOB|SCNN1A|SFT2D3|SLC9A3R1|SYT12|SYT17|SYTL2|TJP3|TP53I11|TRPS1|UCP2	6	6.36139680687e-05	BMP7|CDH1|EPCAM|MSI2|NSUN7|OCLN
MODULE_180	10	ANXA9|ERBB3|GPR160|MSX2|NAT1|NEBL|PRLR|SELENBP1|SULT2B1|VAV3	1.54053682454e-05	38	2.16250205496e-18	AGR2|ANKRD50|BCAM|CDS1|CRABP2|CYB5A|FBP1|FOXA1|GATA3|GSTT1|HGD|IRX5|ISOC1|JUP|KIAA0040|KRT8|KRT18|KRT19|MARC1|MLPH|MUC1|MYO6|NPY1R|PRR15L|RERG|RHOB|S100P|SCNN1A|SFT2D3|SLC9A3R1|SLC38A1|SSH3|SYT12|SYT17|SYTL2|TJP3|TRPS1|UCP2	10	3.08107364907e-05	ANK3|BMP7|CDH1|EPCAM|GRB7|IL17RB|LLGL2|MSI2|NSUN7|OCLN
MODULE_342	12	ANXA9|AZGP1|BMP4|CEACAM6|FXYD3|GPR160|NEBL|PXMP4|RNF43|SELENBP1|SH2D4A|VAV3	1.70429880703e-05	37	3.04840465744e-08	ADIRF|AGR2|CRABP2|CYB5A|DZANK1|FBP1|FOXA1|FOXA3|GATA3|GPC1|GPRC5A|HSPB8|IGFBP2|KIAA0040|KRT8|KRT18|KRT19|LMTK3|MARC1|MIPOL1|MLPH|MUC1|MYO6|PRR15L|REEP6|RERG|S100P|SCNN1A|SERPINB6|SLC9A3R1|SLC38A1|SSH3|SYT17|TRPS1|TSC22D3|WFDC2|WWC1	17	3.40554920941e-05	ANK3|CD24|CDH1|DNMT3B|EPCAM|F2RL1|FAM83D|FAT1|GALNT3|GPX2|GRB7|MYO10|OCLN|PPP1R14C|PRSS23|RTKN|XDH
Mouse EmbryonicStemCell_Abranches09_1170genes (19621087-Table1d)	12	ABAT|CAMK2N1|CBX4|CNTNAP2|CXXC4|DACH1|GRIP1|NKD1|PHF21B|REEP1|STMN3|ZSWIM5	0.000425312390113	81	0.000815950608738	ACVR2B|ADCY6|ADGRB2|AGAP1|ALCAM|APH1B|ARNT2|ASCL1|ATRNL1|BBS1|BCL2|CACNA2D2|CACNG4|CADPS2|CASD1|CDON|CELSR2|CLIC6|CLSTN2|COL4A5|CRABP2|CTNND2|CTXN1|CUEDC1|DZIP3|EVL|FARP2|FBXL7|FGF13|FLRT3|GALNT16|GLI3|GLRB|GPC1|GPHN|HDGFL3|HIP1|IFT122|IGF1R|IRS1|IRX2|IRX3|IRX5|KIF5C|LONRF2|LRIG1|LRRC49|MAGEE1|MAST4|MEGF9|NKAIN1|NTN4|OLFM1|OSBPL6|OSCP1|PBX3|PCGF3|PRKAR2B|PTPRN2|ROBO2|RXRA|S1PR3|SH3BGRL|SIAH2|SLC1A2|SLC22A23|SLC39A6|SORCS1|SPEF1|SYT1|TCEAL1|TMTC2|TOX3|TPBG|TRIL|TSC22D3|TSHZ1|TSPAN13|TTC9|ULK2|WDFY3	54	3.46741714885e-05	AK3|APCDD1|B3GALT1|BRSK2|CADPS|CD24|CHD6|CXADR|DUSP18|DYRK2|EPHB2|ERBIN|FAM84A|FAM171A1|FHOD3|GALNT4|GNAS|GOLIM4|H2AFY2|HSD11B2|ID4|KLHL29|LRP4|MAP2K6|MEX3A|MLLT3|MSL1|MYCL|NXPE4|OCIAD2|PCDH8|PCDHGA11|PLAGL1|PLAGL2|POFUT1|PROX1|PTPRD|RAB11FIP2|RANBP6|RHOBTB3|RTKN|SATB1|SATB2|SEC63|SEMA5A|SNCAIP|SOX4|TM9SF3|TSC22D2|TSPAN7|TSPAN12|ZBTB39|ZCCHC14|ZNF711
ONDER_CDH1_TARGETS_2_DN	14	AREG|CAMK2N1|CEACAM6|CNTNAP2|COBLL1|CYP4F11|ERBB3|EREG|FGFR3|FXYD3|GALNT6|SDC4|SEMA3C|SORL1	0.000354964909995	57	0.000706107672043	ABCA12|ABLIM1|ADIRF|AP1M2|CA12|CDS1|CELSR1|CELSR2|CORO2A|CST6|CYB5R1|CYB561|DUSP10|EHF|EPN3|EPS8L1|FGFR2|FLNB|FLRT3|GPRC5A|HES1|IER3|INPP4B|JUP|KIAA0040|KRT8|KRT18|LYPD3|MARC1|MAST4|MCOLN3|MGST2|MISP|MREG|P2RY2|PAK6|PIP4K2C|PLK2|RAB17|RAB38|RBM47|RHOD|S100A14|S100P|SCNN1A|SEMA3F|SERPINA1|SERPINA3|SLC7A8|SPINT1|ST6GALNAC2|STEAP1|SYBU|TNFSF10|TSPAN1|TSPAN13|WWC1	40	3.82214794706e-06	AKAP1|ANK3|CD24|CDH1|CEACAM1|CLDN1|CTSH|CTSV|CWH43|CXADR|DMD|EDN1|EFNA1|EPB41L4B|EPCAM|ERVMER34-1|EXPH5|FHOD3|FZD5|GALNT3|ITGA2|KANK1|KRT15|LRRC1|LY75|MAPK13|MECOM|MPZL2|OCLN|PSTPIP2|QPCT|SEL1L3|SEMA3A|SERINC5|SPAG1|ST6GAL1|ST14|TFCP2L1|XDH|ZDHHC13
RAF_UP.V1_DN	7	ABAT|CCDC170|PDZK1|SELENBP1|SHROOM2|TTC39A|VAV3	0.000371710755688	63	1.37598382089e-21	ABCA12|ABLIM1|AGR2|ALCAM|APBB2|ARL3|ARNT2|ASCL1|BCL2|C16ORF45|CA12|CCND1|CELSR2|DLG5|DNAJC12|ELOVL2|FAM234B|FTO|GDAP1|GFRA1|GPATCH2|GPC4|GREB1|HDGFL3|HSPB8|IGF1R|IGFBP2|IL24|INPP4B|IRS1|IRX5|KIAA1324|LRIG1|MED13L|MEGF9|MSMB|MYB|NEDD4L|NPY1R|PCGF3|PCSK6|PGR|PKP4|PLK2|PPP1R3C|S100A14|SCUBE2|SERPINA3|SH3BGRL|SIDT1|SLC1A1|SLC7A2|SLC19A2|STC2|SYTL2|TBC1D30|TFAP2A|TFF1|TFF3|TMEM268|TRPS1|TSC22D3|UGDH	17	0.000743421511376	AK4|BAMBI|COL9A3|DIDO1|EPB41L2|EPB41L4B|ID1|ID2|LIN7C|MYO10|PLS1|RHOBTB3|SATB2|SMAD7|SOX4|TGIF2|ZBTB10
RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_MODERATELY_UP	4	CHPT1|GPD1L|SUOX|TMEM150C	5.14055710136e-05	21	9.6055888053e-05	ABCC5|ACSS1|ARHGEF26|C2CD5|CYP4X1|DZIP3|ENPP4|ETNK2|FAM102B|FOXA1|GATM|GLCCI1|KAT6B|LEF1|MYB|P4HTM|PBX1|PRKAR2B|SFT2D3|TMTC2|ZNF513	16	6.75525397421e-06	BCL11A|CLCA4|COMMD7|EDEM2|FAM171A1|GGT7|HEATR5B|LINC01315|MAP2K6|MAP7D2|MECOM|MSI2|MYLIP|TRAF5|TSPAN6|ZBTB18
RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN	19	ABAT|CHPT1|CROT|ENPP5|EPB41L5|ERBB3|FHDC1|FMO5|GPD1L|GPR160|HDAC11|LNX1|PROM2|SELENBP1|SLC40A1|SORL1|STMN3|TMEM150C|VWA5A	0.000266398743421	91	0.000401458217984	ABCG1|ABLIM1|ADD1|AKAP9|ALDH3A2|APBB2|AR|ARSD|BBS1|BCAM|BCL2|C3ORF52|CBR4|CDON|CDS1|CRIPAK|CYB5D1|CYB561|CYBRD1|FBXL17|FBXO9|FLNB|FYCO1|GATM|GLCCI1|GLUL|GOLGB1|GPRC5A|HEBP1|HES1|HSD17B8|IFT46|IRS1|IVD|KDM4B|KIAA0485|KIF9|KLHL41|KRT8|L3MBTL1|LIMCH1|LONP2|LRIG1|LRRC37A2|LYRM9|MAGI2|MAN2B2|MAP3K1|MARC2|MARVELD2|MCCC2|MED13L|NFIA|NUDT16|NUDT16P1|PATJ|PDLIM5|PIGV|PLAT|PLEKHH1|PLLP|PPP1R13B|PSD4|PTPN13|RALGAPA2|RAP1GAP|RELL1|SASH1|SBSPON|SERPINA1|SH3RF1|SIAE|SLC1A1|SLC25A29|SORD|SUGT1P3|TCTN1|THNSL2|TMEM80|TMEM164|TOM1L2|TRAK1|TSHZ1|TSPAN31|USP54|UVSSA|WDR72|WFDC2|WWC1|WWOX|ZBED5-AS1	54	0.000131339268859	ACOX1|ADD3|AKAP1|APLP2|APOLD1|ATP1A1|BICRAL|CACHD1|CCL28|CD24|CES2|DMD|DNAJC5|EFNA1|EPB41L4B|EPCAM|ERBIN|FAM13A|FAM13A-AS1|FGD4|FZD5|GID8|GNAS|KANK1|LINC00667|LLGL2|MACROD1|MANSC1|MAP3K20|MAPK13|METTL9|MSI2|MYLIP|PID1|PROX1|RBL2|SAMD13|SEC63|SESN1|SH3YL1|SHANK2|SNTB1|SRI|STK4|STT3B|TBC1D24|TCFL5|TOB1|TSPAN5|TSPAN6|TSPAN12|VAPB|ZBTB18|ZCCHC7
SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_UP	18	ANXA9|C5ORF30|COBLL1|CROT|ENPP5|FAM110C|FGFR3|FXYD3|MPP7|PROM2|PRR15|SERINC3|SLC12A2|SLC40A1|SP5|SUOX|TUFT1|VWA5A	3.5124619902e-06	62	7.02478087954e-06	ACSS1|AFF1|AGR2|ARHGEF26|ASB13|ATP8A2|BCL2|BDH2|CARD19|CBLN2|CLIC6|COL4A5|COL4A6|CORO2A|DCDC2|DCXR|DLG3|ELOVL2|ERGIC1|FAM149A|FGF12|FGFR2|FOXA1|GADD45G|GATA3|GLUL|HOXD8|HSPA2|IGFBP2|KRT19|LYPD6|MBOAT1|MKX|NKX3-1|NQO1|NRIP1|PHYHD1|PLLP|PTPN13|RAB3IP|RAB15|RAB17|RALGPS2|RAMP1|RBBP7|RNASE4|S100A14|SCNN1A|SLITRK6|SPINT1|STARD10|STC2|SUSD3|TCIM|TIPARP|TLE6|TMC4|TMEM184A|TSC22D3|TSPAN1|TSPAN13|WNT4	49	1.43100868592e-10	ABCC4|ATP1A1|B3GNT8|BCL2L1|CD24|CDH1|CEACAM1|CEMIP|CLDN8|CLDN23|COL9A3|DIO3|DPEP1|EDN1|EPCAM|EPHX2|ETV4|FAM105A|FAM189A1|FAM213A|GPX2|GSPT2|HOXB9|HOXB13|ID1|ID2|ID3|KBTBD11|KCNMB4|KRT15|KRT23|LLGL2|LY6G6E|LY75|MAPK13|NCK2|NUDT7|PID1|PPFIBP2|PTGR1|RIPPLY3|SH3YL1|SP6|SPINK5|TFCP2L1|TMC7|TMED6|TSPAN12|WIF1
SMID_BREAST_CANCER_BASAL_DN	53	ABAT|ABCC6|ACOX2|ANXA9|AREG|AZGP1|BCAS4|BMP4|C5ORF30|CACNA1D|CAMK2N1|CCDC170|CEACAM5|CEACAM6|CERS6|CNTNAP2|CROT|CXXC4|DACH1|DCAF10|DNMBP|ERBB3|ESRRG|FGFR3|FMO5|GALNT6|GPD1L|HDAC11|HMGCS2|INPP5J|LIN7A|LRRC31|MSX2|NAT1|NAT2|NEBL|PBLD|PDZK1|PRLR|REEP1|REPS2|RETREG1|SELENBP1|SEMA3C|SERPINA6|SLC4A8|SLC26A3|SORL1|SPAG16|TBX3|TP53TG1|TTC39A|VAV3	2.50397770013e-06	332	2.18602050921e-203	ABCA12|ABCC8|ABCG1|ABLIM3|ACADSB|ADCY1|ADCY9|ADGRB2|ADIRF|AGL|AGR2|AK5|AKR7A3|ALCAM|ALDH3B2|ALDH4A1|APBB2|AR|ARHGAP32|ARHGAP35|ARL3|ARMT1|ASAH1|ASCL1|ASPH|ASTN2|ATP7B|ATP8A2|ATRNL1|B9D1|BAIAP3|BBS4|BCAM|BCAS1|BCL2|BEX1|BLVRA|BMPR1B|BTG2|C1ORF21|C3ORF52|C9ORF116|C16ORF45|CA12|CACNA2D2|CACNG1|CACNG4|CANT1|CAPN9|CASC1|CASD1|CATSPERB|CCDC106|CCND1|CCNO|CDS1|CELSR1|CERS4|CFAP45|CFAP69|CFB|CHAD|CHRD|CITED1|CLBA1|CLGN|CLSTN2|COL4A5|COL4A6|COQ4|CPB1|CRAT|CREB3L1|CRIP1|CRIP2|CRISP3|CSAD|CX3CR1|CYB5A|CYB561|CYBRD1|CYP2B7P|CYP2E1|CYP4B1|CYP4F8|CYP21A2|DCXR|DDO|DEPTOR|DGKD|DHCR24|DHRS2|DIO1|DLG3|DLG5|DNAAF1|DNAJC1|DNAJC12|DNALI1|DUSP4|DUSP5|DZANK1|DZIP3|EEF1A2|EFCAB2|EFHC1|EGOT|ELOVL2|ELOVL5|ENPP1|ENTPD3|EPS8L1|ERBB4|ESR1|EVA1B|EVL|F7|FAAH|FAH|FAIM2|FAM83E|FAM110B|FAM174B|FAM198B|FAM234B|FASN|FBP1|FBXL7|FLRT3|FOXA1|FRY|FUT8|GALNT7|GAMT|GATA2|GATA3|GDF15|GFRA1|GLRB|GNA14|GNMT|GOLGA2P5|GP2|GPRC5A|GPRC5C|GREB1|GREB1L|GRIA2|HEBP1|HGD|HPN|HPX|HSPA2|HSPB1|HSPB8|IFT122|IGF1R|IL6ST|INPP4B|IQGAP2|IRS1|IRX5|ISYNA1|IVD|KAT6B|KAZALD1|KCND3|KCNE4|KCNJ3|KCNK15|KCNMA1|KDM4B|KIAA0040|KIAA0485|KIAA1324|KIF5C|KIF16B|KRT8|KRT18|KRT19|LDLRAD4|LIAS|LONP2|LRBA|LRIG1|LRRC6|MAGED2|MAK|MAPT|MARC1|MAST4|MCCC2|MED13L|MEGF9|MISP|MKNK2|MLPH|MREG|MRPS30|MSMB|MUC1|MYB|MYO6|MZF1|NEDD4L|NKAIN1|NME5|NPDC1|NPY1R|NQO1|NRIP1|PAN2|PATJ|PAX2|PBX1|PCSK6|PEX11A|PGR|PIEZO2|PIP|PLAT|PLCL1|PNPLA2|PNPLA4|POLD4|PP14571|PPDPF|PPIP5K1|PPP1R3C|PSD3|PTGER3|PTK6|PTP4A2|PTPRN2|PTPRT|PVALB|QDPR|RAB17|RAB27B|RAB38|RABEP1|RAI2|RALGPS1|RALGPS2|RARA|RBM47|RET|RHBDL1|RHOB|RMND1|RNASE4|RND1|SCCPDH|SCGB1D2|SCGB2A2|SCGN|SCNN1A|SCUBE2|SEC14L2|SERHL2|SERPINA5|SH3BGRL|SIDT1|SIGLEC15|SLC1A1|SLC1A4|SLC2A10|SLC4A7|SLC7A8|SLC9A3R1|SLC16A6|SLC19A2|SLC22A18|SLC27A2|SLC35E3|SLC38A1|SLC39A6|SLC44A4|SLC48A1|SMIM14|SORD|SPDEF|SPHK2|SREBF1|SSH3|SSTR2|ST6GALNAC2|STC2|STK32B|STK39|STS|SYBU|SYT1|SYT17|SYTL2|TBC1D9|TBC1D30|TCEAL4|TESMIN|TFAP2B|TFF1|TFF3|TJP3|TKFC|TMC5|TNFSF10|TNIK|TNNT1|TOX3|TPPP3|TRAK1|TRIL|TRIM3|TRIM36|TSPAN1|TSPAN13|TTC9|TTC12|UCN|UCP2|UGCG|UGDH|UGT2B15|UGT2B28|VIPR1|WWOX|WWP1|XBP1|ZMYND10|ZNF91|ZNF446|ZNF839	19	5.00795540025e-06	CDK12|CHN2|EPHX2|HNMT|HOXB6|MSL1|NCOA3|PCK1|PRKACB|PRSS23|SLC2A8|SLC6A4|SMPD3|SRI|TOB1|TRAF5|TRIM68|ZBTB18|ZMYND8
SMID_BREAST_CANCER_ERBB2_UP	5	ABCC6|CEACAM6|GALNT6|HMGCS2|LRRC31	0.000466138921327	34	8.43126489816e-09	ABCA12|ALCAM|ALDH3B2|ALDH4A1|AR|ASPH|C2ORF72|CATSPERB|CRISP2|CRISP3|CYB561|FAIM2|FASN|FFAR2|HPX|MUC1|NQO1|PEX11A|PIP|PLEKHA6|PRODH|SCGB1D2|SCGB2A2|SCNN1A|SERHL2|SLC2A10|SLC44A4|TFAP2B|TMC5|TRIM3|TRPM4|TSPAN1|UCP2|UGT2B28	14	0.00093226941139	ABCC2|ACE2|C2ORF54|CD24|CD46|CD164|CDK12|DDC|EFNA3|GRB7|NCOA3|QPRT|SQSTM1|SRSF6
WAMUNYOKOLI_OVARIAN_CANCER_GRADES_1_2_UP	7	CXXC5|ERBB3|GPR160|PBLD|SH2D4A|SLC35A3|UNC5CL	4.08173711556e-05	22	8.1531292887e-05	ABCD3|ABHD2|AGR3|ARSD|ATP1B1|BAG1|C3ORF52|GALNT7|IQGAP2|MUC1|MYO6|NQO1|RASEF|RASSF6|S100A14|SFXN1|SH3RF1|SLC35D2|SLC39A11|STK39|SYTL2|TOX3	19	1.03449424229e-07	CD24|CD164|CLDN23|DDAH1|EPCAM|ETNK1|FOXQ1|FZD5|GALNT3|GALNT4|GFPT1|IRAK2|LLGL2|MECOM|MYO10|OCIAD2|PLS1|SH3BGRL2|TM9SF3
WAMUNYOKOLI_OVARIAN_CANCER_LMP_UP	9	CAMK2N1|CHPT1|CXXC5|ERBB3|FMO5|FXYD3|GPR160|SLC35A3|UNC5CL	3.21404861303e-05	47	1.38485985053e-07	AACS|ABCD3|AGR2|AGR3|ARRDC1|ARSD|ATP1B1|BAG1|C3ORF52|C9ORF152|C19ORF33|CACFD1|CANT1|CCND1|CIB1|EHF|FAM174B|FAM213B|FLNB|FUT2|GALNT7|IER3|IQGAP2|MARVELD2|MKNK2|MLPH|MUC1|MYO6|NANS|NQO1|PLEKHH1|PPDPF|PSD4|RASEF|SLC2A10|SLC22A23|SLC35D2|STARD10|SYTL2|TC2N|TJP3|TMC5|TMC6|TMEM125|TNFSF10|TOX3|TRAK1	24	6.41424862756e-05	ABHD6|CD24|DBI|DDAH1|DHTKD1|DYRK2|EPCAM|FOXQ1|GALNT3|GALNT4|GFPT1|GSS|HM13|LLGL2|MANSC1|MECOM|MYO10|PLS1|RALY|SH3BGRL2|ST14|TM9SF3|TOP1|ZMYND8
apical plasma membrane [GoID:GO:0016324; evidenceTypes:IBA|IDA|IEA|IMP|ISS|NAS|TAS]	11	ABCC6|CFAP126|ERBB3|GPR143|PARD6B|PDZK1|PROM2|SHROOM2|SLC12A2|SLC22A5|SLC26A3	0.000296856039262	36	0.000589824461226	AHCYL1|AKR1A1|ATP1B1|ATP7A|CACNB3|CIB1|HPN|IGFBP2|ITPK1|KCNE4|KCNMA1|LRP2|MARVELD2|MREG|MTCL1|MUC1|PATJ|PFKM|PKHD1|RAB17|RAB27B|SCNN1A|SHROOM3|SLC1A1|SLC4A7|SLC9A3R1|SLC22A4|SLC22A18|SLC23A1|SLC44A4|SLC46A1|STC1|STK39|STXBP2|TNIK|UMOD	27	3.8876172975e-06	ABCB1|ABCB4|ABCC2|AMOTL2|ATP1A1|CA4|CDHR2|CDHR5|CEACAM1|CFTR|CLCA4|CLDN1|CRB2|CYP4F2|DPEP1|EPCAM|GNAS|MUC20|OCLN|PLB1|SCNN1B|SHANK2|SHROOM4|SLC26A2|STX3|TDGF1|USH2A
morphogenesis of an epithelium [GoID:GO:0002009; evidenceTypes:IBA|IC|IDA|IEA|IEP|IGI|IMP|ISS|NAS|TAS]	14	AREG|BBS5|BMP4|BTRC|EPB41L5|MSX2|NKD1|NPNT|SDC4|SEMA3C|STOX1|SYNE4|TBX3|WNK4	0.000243235041711	69	4.28826778862e-05	AGT|AR|ARHGAP35|ASTN2|ATP7A|BBS4|BCL2|CAMSAP3|CC2D2A|CCDC40|CCDC103|CELSR1|CELSR2|CELSR3|CITED1|COBL|DLG3|DLG5|DNAAF1|EGF|ESR1|FGF10|FGFR2|FLRT3|FMN1|FOXA1|FOXN1|FOXN4|FRS2|FUZ|GATA3|GCM1|GLI3|GPC4|HES1|IFT122|INTU|IRX2|IRX3|LEF1|LIAS|LRP2|MAGI2|MEGF8|NFATC4|NKX3-1|NTN4|PAX2|PBX1|PGR|RARA|RBPJ|RET|RHOB|RHOC|RPGRIP1L|RREB1|RXRA|SHROOM3|SLC9A3R1|SPINT1|STARD13|TCTN1|TFAP2A|TRAF3IP1|UBC|WDR1|WNT4|WNT7B	37	0.000443587405536	ACVRL1|BMP7|CEACAM1|CTSH|CTSV|EDN1|FOXQ1|FREM2|FZD5|HOXB4|HOXB7|HOXB13|ID4|IFT52|IHH|KLHL3|LGR5|LIN7C|MLLT3|MYC|PCDH8|PITX2|PRKACB|PROX1|PSMA7|PTK7|SEMA3A|SOSTDC1|SOX4|SRC|ST14|STK4|TEAD2|TGM2|TRAF6|WNT11|ZNRF3
pattern specification process [GoID:GO:0007389; evidenceTypes:IBA|IDA|IEA|IEP|IGI|IMP|ISS|NAS|TAS]	8	BBS5|BMP4|CXXC4|EPB41L5|MSX2|NKD1|SEMA3C|TBX3	0.000106237334564	70	1.90154628593e-08	ACVR2B|AR|ASCL1|ASPH|BBS4|BCOR|BMPR1B|BTG2|CC2D2A|CCDC40|CCDC103|CCDC151|CDON|CELSR1|CELSR2|CFAP53|CHRD|CITED1|COBL|DISP1|DLX1|DLX2|DNAAF1|DNAAF4|DNAH5|DNAI1|DPCD|EGF|EMX1|ERBB4|FBXL15|FGF10|FGFR2|FOXA1|FOXJ1|FOXN4|FRS2|FUZ|GLI3|GSC|HES1|HOXD4|HOXD8|IFT122|INTU|IRX2|IRX3|LEF1|LFNG|LMX1B|LRP2|LRRC6|MEGF8|MNS1|NKX3-1|PAX2|PBX1|PBX3|PCSK6|PLD6|RBPJ|RPGRIP1L|SEMA3F|SHROOM3|STC1|TCTN1|TRAF3IP1|TSHZ1|WDR19|WNT7B	35	0.000212455653665	AURKA|AXIN2|BMP7|CDX2|CRB2|DMRT2|DRC1|EDN1|ETS2|FZD5|HIPK1|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8|HOXB9|IFT52|IFT74|IHH|KIF3B|LEFTY1|LRP4|MLLT3|PCDH8|PITX2|POFUT1|PRKACB|RIPPLY3|SATB2|SEMA3A|SMAD6|SOSTDC1|TDGF1
tube development [GoID:GO:0035295; evidenceTypes:IBA|IC|IDA|IEA|IEP|IGI|IMP|ISS|NAS|TAS]	12	AREG|BBS5|BMP4|BTRC|EPB41L5|MSX2|NPNT|SDC4|SEMA3C|STOX1|TBX3|WNK4	0.000546804848286	73	0.000418799566451	ABCA12|ACVR2B|AGR2|AGT|AQP11|AR|ARHGAP35|ASCL1|ATP7A|BBS4|BCL2|CC2D2A|CCDC40|CCDC103|CELSR1|CHRD|CITED1|COBL|DLG5|DNAAF1|EGF|ESR1|FGF10|FGFR2|FMN1|FOXA1|FOXJ1|FOXN4|FUZ|GATA2|GATA3|GLI3|GSC|HES1|IFT122|INTU|IRX2|IRX3|ITPK1|LEF1|LIAS|LRP2|MEGF8|NFATC4|NFIA|NKX3-1|NUMA1|PAX2|PBX1|PGR|PTK6|RARA|RBPJ|RET|RHOB|ROBO2|RPGRIP1L|SALL2|SFTPD|SHROOM3|SLC23A1|SPDEF|SPINT1|SREBF1|STARD13|TCTN1|TFAP2B|TRAF3IP1|UMOD|WDR19|WDR48|WNT4|WNT7B	42	0.000674810130122	ACVRL1|ASXL1|BMP7|CBFA2T2|CD24|CDX2|CEBPA|CTSH|EDN1|EPCAM|EPHB3|FGF18|GPSM2|HOXB7|HS6ST1|ID1|ID2|IFT52|IHH|KLHL3|LGR5|MYC|PITX2|PKDCC|PRKACB|PROX1|PTK7|SERPINE2|SMAD6|SMAD7|SOSTDC1|SOX4|SRC|SRSF6|ST14|STK4|STRA6|TCF7|TEAD2|TGM2|TRAF6|WNT11
tube morphogenesis [GoID:GO:0035239; evidenceTypes:IBA|IC|IDA|IEA|IEP|IGI|IMP|ISS|TAS]	11	AREG|BBS5|BMP4|BTRC|EPB41L5|MSX2|NPNT|SDC4|STOX1|TBX3|WNK4	0.000253499265876	47	0.000186016659363	ACVR2B|AGR2|AGT|AR|ARHGAP35|BBS4|BCL2|CC2D2A|CCDC40|CCDC103|CELSR1|CITED1|COBL|DLG5|DNAAF1|EGF|ESR1|FGF10|FGFR2|FMN1|FOXA1|FOXN4|FUZ|GATA3|GLI3|HES1|IFT122|IRX2|IRX3|LEF1|LIAS|LRP2|MEGF8|NFATC4|NKX3-1|PAX2|PBX1|PGR|RARA|RBPJ|RET|RHOB|SHROOM3|SPINT1|STARD13|TCTN1|WNT4	27	0.000320981872388	ACVRL1|BMP7|CTSH|EDN1|EPHB3|HOXB7|ID2|IFT52|IHH|KLHL3|LGR5|MYC|PITX2|PRKACB|PROX1|PTK7|SOSTDC1|SOX4|SRC|ST14|STK4|STRA6|TCF7|TEAD2|TGM2|TRAF6|WNT11
